trnal-cag-5


Basic Information

Item Value
gene id trnal-cag-5
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16013536 ~ 16013618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnal-cag-5
gtcaggatggccgagcggtctaaggcgctgcgttcaggtcgcagtctcctctggaggcgtgggttcgaatcccacttctgaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-cag-5 True 83 mRNA 0.60 1 16013536 16013618

Neighbor

gene id symbol gene type direction distance location
LOC110531609 LOC106577837 coding downstream 33735 15951928 ~ 15979801 (-)
LOC110532935 LOC106577836 coding downstream 122267 15867906 ~ 15891269 (-)
LOC118966003 NA coding downstream 156330 15854217 ~ 15857206 (-)
cxcd2 cxcd2 coding downstream 190318 15820411 ~ 15823218 (-)
LOC118966175 LOC106577834 coding downstream 200339 15810151 ~ 15813197 (-)
LOC110531611 LOC106577839 coding upstream 35126 16048744 ~ 16087030 (-)
LOC110531612 LOC106577840 coding upstream 82344 16095962 ~ 16117909 (-)
trnak-cuu-4 NA coding upstream 119427 16133045 ~ 16133117 (-)
trnan-guu-3 NA coding upstream 119987 16133605 ~ 16133678 (-)
gba2 gba2 coding upstream 172639 16186257 ~ 16220121 (-)
G775577 NA non-coding downstream 7278 16005764 ~ 16006258 (-)
G775570 NA non-coding downstream 25756 15987405 ~ 15987780 (-)
G775558 NA non-coding downstream 44784 15968085 ~ 15968752 (-)
G775516 NA non-coding downstream 61749 15950795 ~ 15951787 (-)
G775541 NA non-coding downstream 82599 15930625 ~ 15930937 (-)
G775584 NA non-coding upstream 1138 16014756 ~ 16015038 (-)
G775585 NA non-coding upstream 1423 16015041 ~ 16015365 (-)
G775591 NA non-coding upstream 15346 16028964 ~ 16029642 (-)
G775594 NA non-coding upstream 20415 16034033 ~ 16034348 (-)
G775596 NA non-coding upstream 23905 16037523 ~ 16037910 (-)
G775532 NA other downstream 100242 15912836 ~ 15913294 (-)
G775139 NA other downstream 149702 15862320 ~ 15863834 (-)
LOC110531603 groa other downstream 225930 15781909 ~ 15787666 (-)
G774954 NA other downstream 387616 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 652217 15352307 ~ 15361319 (-)
LOC110531626 LOC106608856 other upstream 813435 16827053 ~ 16828583 (-)
G776294 NA other upstream 851849 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 996394 17010012 ~ 17014685 (-)
G776355 NA other upstream 1011762 17025380 ~ 17025813 (-)
G776461 NA other upstream 1231816 17245434 ~ 17245797 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnal-cag_24 NA coding NC_053134.1 CM020931.1 19452946 ~ 19453028 (-)
tiger barb (Puntius tetrazona) trnac-gca_31 NA coding NC_056709.1 CM032078.1 1113896 ~ 1113967 (-)
tiger barb (Puntius tetrazona) trnal-cag_34 NA coding NC_056718.1 CM032087.1 10932562 ~ 10932644 (-)
mexican tetra (Astyanax mexicanus) trnal-cag_54 NA coding NW_019172899.1 APWO02000093.1 212075 ~ 212157 (-)