trnal-cag_54


Basic Information

Item Value
gene id trnal-cag_54
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172899.1
NCBI id APWO02000093.1
chromosome length 238395
location 212075 ~ 212157 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnal-cag_54
GTCAGgatggccgagcggtctaaggcgctgcgtTCAGGTCGCAGTCTCCTCTGGAggcgtgggttcgaatcccacttctgaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-cag_54 True 83 tRNA 0.61 1 212075 212157

Neighbor

gene id symbol gene type direction distance location
rps6 rps6 coding downstream 146764 60228 ~ 65311 (-)
LOC103030615 smu1b,LOC108431794,LOC108260605,LOC107692159,LOC107720315,LOC107746727 coding downstream 157268 41648 ~ 54807 (-)
LOC111191685 NA coding downstream 192139 3340 ~ 19936 (-)
G323796 NA non-coding downstream 1252 207038 ~ 210823 (-)
G323784 NA non-coding downstream 93720 118051 ~ 118355 (-)
G323780 NA non-coding downstream 132052 76100 ~ 80023 (-)
G323771 LOC108431796,LOC108260608,LOC107746728,LOC107603013,LOC107551804,LOC107676129,LOC107720316 non-coding downstream 170974 36711 ~ 41101 (-)
G323774 LOC104959052,LOC105923828,LOC103137846,LOC106919283,LOC106943044,LOC102232638,LOC106911872 non-coding downstream 176286 33981 ~ 35789 (-)
G323810 NA non-coding upstream 6045 218202 ~ 218514 (-)
G323811 NA non-coding upstream 6506 218663 ~ 218871 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnal-cag-5 NA coding NC_048573.1 CM023227.2 16013536 ~ 16013618 (-)
eurasian perch (Perca fluviatilis) trnal-cag_24 NA coding NC_053134.1 CM020931.1 19452946 ~ 19453028 (-)
tiger barb (Puntius tetrazona) trnac-gca_31 NA coding NC_056709.1 CM032078.1 1113896 ~ 1113967 (-)
tiger barb (Puntius tetrazona) trnal-cag_34 NA coding NC_056718.1 CM032087.1 10932562 ~ 10932644 (-)