XLOC_026708


Basic Information

Item Value
gene id XLOC_026708
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 44111545 ~ 44124370 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053100
CAGACACTCAACACACATTAGGCTACTGAAACTGAGCACCTGCTTATAGCTTGAGTTGCGAAAGTAGCCCATGCAACAGCAATGAGAGGCCTGGATCCTAACACCGACCCTTGGGACTCGGTTTAGTGAGTTATGGGGGAGGAGAAGCTTGTTTATACCAAGAAGGTCTGGAGAGAGCTGTCTGTTTGCCTTCCCATTCATCTCTATGAATGTTGCTAAGCATGAGCAACAAGAGACCTGAAAGCAAAAATGGAGAATCCAGCAACAGCACTCCAGGAGGCTGAACCCTGACTTTGGCTGCTGGATGAGGATGAAGCGGAGGAAGGTGAAGTGCTGAAATATTCTTAGGAGATAAGCCAGCAGGTGAAGTGAGTGCTGACAGCCTACGGACAGCCtttatcatcatcctcatcatcatcatcatcacctcgACCTTACGCACAACCTCTACTCTTCCCCTTCCTCCACATTTGAATAATACATTCTCCTCTCCAGCAGAGTCAGCCCAGCCTCCATTTAACCAGGGCTAAACAAGCACAGTCTGTTTCACAGCGCACCTCATGTTTTACCACGGACCCCAGGGTAAATGAGGTCATGTGTCAGCAGTCGCATTCAATGAACTTGCATTTTTCTTAGAAACGCTGACCGTGATCATTTCACCACTTGTCGTTGTCAAAGTCTCACTTCCTATTAAAGAATGAATGTTGTAATGCTATTTTCGTAATGGGGCAGAAATATCTCCACTGGAAATATAAACTGGTTGCACAAGAGCTTGAGTCAAATGTGCTGCTGTTTTAAgc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053100 True 800 lncRNA 0.46 2 44111545 44124370

Neighbor

gene id symbol gene type direction distance location
XLOC_026707 kdm8 coding downstream 17094 44081620 ~ 44094451 (-)
XLOC_026706 il4r.1 coding downstream 51508 44048907 ~ 44060037 (-)
XLOC_026705 il4r.2 coding downstream 98741 44002300 ~ 44012804 (-)
XLOC_026704 ubfd1 coding downstream 151672 43942032 ~ 43959873 (-)
XLOC_026703 BX682557.1 coding downstream 222102 43878456 ~ 43889443 (-)
XLOC_026709 NA coding upstream 208377 44332747 ~ 44335853 (-)
XLOC_026710 hs3st4 coding upstream 416952 44541322 ~ 44753325 (-)
XLOC_026711 usp31 coding upstream 1070849 45195219 ~ 45250924 (-)
XLOC_026712 kctd5a coding upstream 1137017 45261387 ~ 45281350 (-)
XLOC_026713 pdpk1a coding upstream 1159021 45283391 ~ 45308394 (-)
XLOC_026702 BX682557.2 non-coding downstream 236416 43866785 ~ 43875129 (-)
XLOC_026695 NA non-coding downstream 922460 43187194 ~ 43189085 (-)
XLOC_026694 NA non-coding downstream 1084810 43024821 ~ 43026735 (-)
XLOC_026691 CABZ01079183.1 non-coding downstream 1245345 42866083 ~ 42866200 (-)
XLOC_026716 NA non-coding upstream 1415416 45539786 ~ 45543451 (-)
XLOC_026719 NA non-coding upstream 1707707 45832077 ~ 45843700 (-)
XLOC_026722 NA non-coding upstream 2028757 46153127 ~ 46217473 (-)
XLOC_026723 CR450782.1 non-coding upstream 2100219 46224589 ~ 46227010 (-)

Expression


Co-expression Network