exosc10 (exosc10)


Basic Information

Item Value
gene id exosc10
gene name exosc10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51044415 ~ 51056932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474819.2
TTACTAAGGGCACTCTAGTCATTTGGGGGGTTTTAATTGTATGTGAGTGATATAtgctatatatatttttcaaagttACTCAAAACAACTAAAATATGGTGCGTTCTGTCGCTGCTCTATACTCCAGTCCGGTTAGTGGCGCTATTGCTCATCTAATGTTAGTGTTACCCATAAAACCCAACGGTGAAGAAGAAAAACCAAGCGCGGTTGTTTCCTGCCACTCGCATGTACAGAAATTAGAGATGGATTCTTCAAACAGTGACAAACAAAATAATAATCAATCTGTTAACGAAGACCCAGCTGGTGTGGACAACGAATTTTGTCCCGGTTTCAAGGATGTGGATGCATTTGTGAAGTATGGACTGGGCACTGTCGTAGCAGCTACTAAGGCATCTGCCAGTCTACCGCAAGTAGGGGATGAATATGACTTATATCGCAGCTTCCCGGGATTTCAAGAATTCTGTGAAACTCAAGGAGATGGACTGTTGCATTGTATGAGTCAGATAATGCACCACCATGGCTGCAGAGCTCACATGAGAGACCGCAACAAACTGACGGGGTTGGAGGAAAGATTTGACTTGGTGGTTGATTCCAATGATGTCATTCTTGAGAAAGTGGGTATTCTGCTTGATGATGCTGCCGGAGTCAACAGAAGCCAGCAACCTGTCATGCCCGCAGGTTTTCAGCCCCCTAAGATCGTCGTATCCAGTTGGAATCGTAAGGGGGGTGACTCTGGTTCTGGACGTAGTTCAGAGACATTCCGACTCCTCCAAGCCAAAAACGTCACCAGACCTCAGTTGAAATTCCGTGAAAAAGTTGACAATAGCAACACACCGTTTACTCCAAAGATCTTCGTCAAGCCCAATGCAATAAAACCACTTCCTTCATATTTTACCAACAAACACATTCGCAAAGAGAGACCAGAGGATTTGGATGTCCCTGCCGCCCTGGCTGATTTCATTCACCAGCAGAGAACTCAGGAGCATGTAGAAGACATGTTCGCTCACCCATACCAATACGAACTGGATCACCTTGCGTTACCCGAGAATCTTCTGTCCAAGCCTGAACCCCAGATGTACAAACCACTTGCTGAGACAAAGTGCTCATTCATTGACACTCTGGAGGATCTGGTGGCAGTAAATGAGAAACTGGCCAAGACGTCAGAGTTTGCAGTAGATCTGGAGCACCACTCCTACAGAAGTTTTTTGGGCATCACCTGCCTGATGCAGATTTCAACACGGGATGAAGACTTCATTATAGACACCTTGGAGCTGCGTAGTGAGCTGTACATACTCAATGAGGCTTTCACAGATCCCGCCATCGTCAAGGTTTTCCATGGTGCAGACTCTGATATTGAGTGGCTGCAAAAGGATTTGGGCCTTTACATTGTCAACATGTTTGACACTCACCAGGCGTCACGTACCCTTAACCTGGGCAGGCACTCGCTTGACCACTTGCTTAAGCTGTTCTGCAACGTGGACTCTGACAAACGCTACCAACTGGCAGACTGGAGAATACGGCCTTTGCCAGATGAGATGTTTCAGTATGCCCGGGCAGATACCCACTACCTCCTCTATGTCTACGATCGGCTGAGGGTGGACCTGTGGGAAGTGGGCAATGGGCAGCCTGCCCTGCTGCAGATGGTCTGGCACAAAAGCAAAGACATCTCATTGAAGAAATACATGAAGCCGCTCTTCACCGAGGACTCCTACATGGACCTGCTGAGGAAGCAGAAGAAGGCGTTCAACACGCAGCAGCTAACTGCCTTCCGACTGCTGTACGGCTGGAGGGACAAGCTGGCCAGACAGGAGGATGAGAGCACTGGATATGTCCTGCCCAATCATATGATGATTAAGATCTCTGACATCCTGCCCAAAGAGCCTCAAGGCATCATCGCTTGCTGTAACCCTGTCCCACCATTGGTGCGGCAGCAGGTCAACGAGCTCCACCTATTGGTGCAGCAGGCCCGGGAGATGCCCCTTCTCAAGgctGAAATTGTGGCTGACAAGAAGAAAACACTCACGCCCATAAAAAAGCCAGAAATTCCTCTTTTTGGTCCTCATGATACATCCAGAGTCTCTGAAAGTGATATCCCCAGCTTTACCCCAGATGAACTCTCAACCAAAAAGGGGGCACTCTTTTCTgaagaggagcagggagaggaggttGACATGCATAAAATGATGGGTCTAGTAGTTTCAGcgaaaatcacattgtttgaGGAGGACACCGTCAAAGACCCTGGTCACCTCACAGTGGCTCAACAGAAAGCATGCAGGGTTGTCGAGTCATTTCAGAACCCTTTCCGAATGTATCTACCGTCAAACGACATCCATATCTCCAAAAATGCTAAGTTCGACCCCTCTACGAAAATATATGAGATCAGTAATAGATGGAAGCTGCAGAGTGTGGAACAGCAGCAGAAGGAGGTAGAGGCCAAAAAGAAAGCGAAGGAAGAGGCAAAGGCAGTAGCAGAGGAAAGGAAGAAGGCCAAGCAGAGCTACCAGGAATCACTTCAAAATGTTGCGACTGTGCGCCAGCAAGCTTCAGAATCTATAAAACCAGGAGGAAAGAAAAGGGAGAGGGTTGCCAGTGAGACAGGAGAGTCGACCCCAAAACCTAACAAGAAACTAATGAAAGCTGCTGTGAAGAAAAACGAGGACTCTACAACACCTCTAGTTTTCAAACCGTATGACTACAGCCAGTCAGATTTCAAAGTCTTTGCTGGGGCCAAAGGAAATGATGGTAAACAGTTTGATCCAGACAGACAAGGTCATGAACCCAGGAAAAAGGTATTGTTAACATCAAGTTATAATTATGACATTTGCGAAATTAACCCACTGTGTGTACATTGTGCATTCAATGTCATATTGCTAAGTCTACCTTTAACGCTGGCAAGATATTTGTGGAAAAGTAACAGTTCTCATGGCTATTGTAATATCAAGTGAACATTCCTTTTGGTTTCTGTAGAAAAATGCAAAAGCACAAAAATCGAATGCCTGTGCTGGAAACCGAAGTATGTCCTTTTTTGGTGGAAAATCCGAAAGAGGATTCCATCGTAACTGGCCTAAAAGATAGGTCTACCCATCAATGAACCTTCTCTTCTCAAAAAGGAAACCTGttttaaaattagatttttttgtgtgtggatCTAGTTACCTGATGTTAGTACAATGTTgcacaaaatatttttttctttaacaaAGTATTTGCAGCCTGCTTATTAAAATAGTTTTTAAGGGAATTTGTCTTATTTTATTTGTTGATGGAATCTTTACAAAATGTGCTTGCAAATATTCAGACTAGACTTTCAGGTACATTTTTAACCACACTTGTTGTTATAGCTCATACAGTTGTTGGCTGCCGCTCATTAAAAGAGGAACTGGTCAAAACTA
>XM_021616098.2
TAGTCATTTGGGGGGTTTTAATTGTATGTGAGTGATATAtgctatatatatttttcaaagttACTCAAAACAACTAAAATATGGTGCGTTCTGTCGCTGCTCTATACTCCAGTCCGGTTAGTGGCGCTATTGCTCATCTAATGTTAGTGTTACCCATAAAACCCAACGGTGAAGAAGAAAAACCAAGCGCGGTTGTTTCCTGCCACTCGCATGTACAGAAATTAGAGATGGATTCTTCAAACAGTGACAAACAAAATAATAATCAATCTGTTAACGAAGACCCAGCTGGTGTGGACAACGAATTTTGTCCCGGTTTCAAGGATGTGGATGCATTTGTGAAGTATGGACTGGGCACTGTCGTAGCAGCTACTAAGGCATCTGCCAGTCTACCGCAAGTAGGGGATGAATATGACTTATATCGCAGCTTCCCGGGATTTCAAGAATTCTGTGAAACTCAAGGAGATGGACTGTTGCATTGTATGAGTCAGATAATGCACCACCATGGCTGCAGAGCTCACATGAGAGACCGCAACAAACTGACGGGGTTGGAGGAAAGATTTGACTTGGTGGTTGATTCCAATGATGTCATTCTTGAGAAAGTGGGTATTCTGCTTGATGATGCTGCCGGAGTCAACAGAAGCCAGCAACCTGTCATGCCCGCAGGTTTTCAGCCCCCTAAGATCGTCGTATCCAGTTGGAATCGTAAGGGGGGTGACTCTGGTTCTGGACGTAGTTCAGAGACATTCCGACTCCTCCAAGCCAAAAACGTCACCAGACCTCAGTTGAAATTCCGTGAAAAAGTTGACAATAGCAACACACCGTTTACTCCAAAGATCTTCGTCAAGCCCAATGCAATAAAACCACTTCCTTCATATTTTACCAACAAACACATTCGCAAAGAGAGACCAGAGGATTTGGATGTCCCTGCCGCCCTGGCTGATTTCATTCACCAGCAGAGAACTCAGGAGCATGTAGAAGACATGTTCGCTCACCCATACCAATACGAACTGGATCACCTTGCGTTACCCGAGAATCTTCTGTCCAAGCCTGAACCCCAGATGTACAAACCACTTGCTGAGACAAAGTGCTCATTCATTGACACTCTGGAGGATCTGGTGGCAGTAAATGAGAAACTGGCCAAGACGTCAGAGTTTGCAGTAGATCTGGAGCACCACTCCTACAGAAGTTTTTTGGGCATCACCTGCCTGATGCAGATTTCAACACGGGATGAAGACTTCATTATAGACACCTTGGAGCTGCGTAGTGAGCTGTACATACTCAATGAGGCTTTCACAGATCCCGCCATCGTCAAGGTTTTCCATGGTGCAGACTCTGATATTGAGTGGCTGCAAAAGGATTTGGGCCTTTACATTGTCAACATGTTTGACACTCACCAGGCGTCACGTACCCTTAACCTGGGCAGGCACTCGCTTGACCACTTGCTTAAGCTGTTCTGCAACGTGGACTCTGACAAACGCTACCAACTGGCAGACTGGAGAATACGGCCTTTGCCAGATGAGATGTTTCAGTATGCCCGGGCAGATACCCACTACCTCCTCTATGTCTACGATCGGCTGAGGGTGGACCTGTGGGAAGTGGGCAATGGGCAGCCTGCCCTGCTGCAGATGGTCTGGCACAAAAGCAAAGACATCTCATTGAAGAAATACATGAAGCCGCTCTTCACCGAGGACTCCTACATGGACCTGCTGAGGAAGCAGAAGAAGGCGTTCAACACGCAGCAGCTAACTGCCTTCCGACTGCTGTACGGCTGGAGGGACAAGCTGGCCAGACAGGAGGATGAGAGCACTGGATATGTCCTGCCCAATCATATGATGATTAAGATCTCTGACATCCTGCCCAAAGAGCCTCAAGGCATCATCGCTTGCTGTAACCCTGTCCCACCATTGGTGCGGCAGCAGGTCAACGAGCTCCACCTATTGGTGCAGCAGGCCCGGGAGATGCCCCTTCTCAAGgctGAAATTGTGGCTGACAAGAAGAAAACACTCACGCCCATAAAAAAGCCAGAAATTCCTCTTTTTGGTCCTCATGATACATCCAGAGTCTCTGAAAGTGATATCCCCAGCTTTACCCCAGATGAACTCTCAACCAAAAAGGGGGCACTCTTTTCTgaagaggagcagggagaggaggttGACATGCATAAAATGATGGGTCTAGTAGTTTCAGcgaaaatcacattgtttgaGGAGGACACCGTCAAAGACCCTGGTCACCTCACAGTGGCTCAACAGAAAGCATGCAGGGTTGTCGAGTCATTTCAGAACCCTTTCCGAATGTATCTACCGTCAAACGACATCCATATCTCCAAAAATGCTAAGTTCGACCCCTCTACGAAAATATATGAGATCAGTAATAGATGGAAGCTGCAGAGTGTGGAACAGCAGCAGAAGGAGGTAGAGGCCAAAAAGAAAGCGAAGGAAGAGGCAAAGGCAGTAGCAGAGGAAAGGAAGAAGGCCAAGCAGAGCTACCAGGAATCACTTCAAAATGTTGCGACTGTGCGCCAGCAAGCTTCAGAATCTATAAAACCAGGAGGAAAGAAAAGGGAGAGGGTTGCCAGTGAGACAGGAGAGTCGACCCCAAAACCTAACAAGAAACTAATGAAAGCTGCTGTGAAGAAAAACGAGGACTCTACAACACCTCTAGTTTTCAAACCGTATGACTACAGCCAGTCAGATTTCAAAGTCTTTGCTGGGGCCAAAGGAAATGATGGTAAACAGTTTGATCCAGACAGACAAGGTCATGAACCCAGGAAAAAGAAAAATGCAAAAGCACAAAAATCGAATGCCTGTGCTGGAAACCGAAGTATGTCCTTTTTTGGTGGAAAATCCGAAAGAGGATTCCATCGTAACTGGCCTAAAAGATAGGTCTACCCATCAATGAACCTTCTCTTCTCAAAAAGGAAACCTGttttaaaattagatttttttgtgtgtggatCTAGTTACCTGATGTTAGTACAATGTTgcacaaaatatttttttctttaacaaAGTATTTGCAGCCTGCTTATTAAAATAGTTTTTAAGGGAATTTGTCTTATTTTATTTGTTGATGGAATCTTTACAAAATGTGCTTGCAAATATTCAGACTAGACTTTCAGGTACATTTTTAACCACACTTGTTGTTATAGCTCATACAGTTGTTGGCTGCCGCTCATTAAAAGAGGAACTGGTCAAAACTA

Function

symbol description
exosc10 Predicted to enable 3'-5'-exoribonuclease activity and single-stranded RNA binding activity. Predicted to be involved in RNA catabolic process and ncRNA 3'-end processing. Predicted to act upstream of or within RNA processing. Predicted to be part of nuclear exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human EXOSC10 (exosome component 10).

NR:

description
exosome component 10

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0000176 nuclear exosome (RNase complex) cellular_component
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12591 RRP6, EXOSC10; exosome complex exonuclease RRP6

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474819.2 False 3395 mRNA 0.45 24 51044415 51056932
XM_021616098.2 True 3202 mRNA 0.46 25 51044430 51056932

Neighbor

gene id symbol gene type direction distance location
cntn3a.2 LOC106572060 coding upstream 2770 50965717 ~ 51041645 (+)
si:dkey-178k16.1 LOC106572064 coding upstream 486918 50445552 ~ 50557497 (+)
LOC118966068 NA coding upstream 616321 50423446 ~ 50428094 (+)
fam217b LOC106572066 coding upstream 636045 50402564 ~ 50408370 (+)
LOC110532305 LOC106572068 coding upstream 685052 50224844 ~ 50359369 (+)
srm srm coding downstream 4140 51061072 ~ 51067904 (+)
cort LOC106572313 coding downstream 49395 51106327 ~ 51107746 (+)
LOC110531197 NA coding downstream 68203 51125135 ~ 51127512 (+)
masp2 masp2 coding downstream 116830 51173762 ~ 51181734 (+)
pex14 pex14 coding downstream 145801 51202733 ~ 51319382 (+)
G815580 NA non-coding upstream 27634 51015307 ~ 51016781 (+)
G815552 NA non-coding upstream 89991 50953753 ~ 50954424 (+)
G815543 NA non-coding upstream 98660 50945412 ~ 50945755 (+)
G815536 NA non-coding upstream 106198 50938008 ~ 50938217 (+)
G815528 NA non-coding upstream 121414 50922775 ~ 50923001 (+)
G815611 NA non-coding downstream 22624 51079556 ~ 51088643 (+)
G815629 NA non-coding downstream 40430 51097362 ~ 51097596 (+)
G815630 NA non-coding downstream 40847 51097779 ~ 51098009 (+)
G815643 NA non-coding downstream 61168 51118100 ~ 51118396 (+)
G815734 NA non-coding downstream 201977 51258909 ~ 51264781 (+)
G815428 NA other upstream 244034 50796214 ~ 50800381 (+)
G813139 NA other upstream 1928797 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 2037705 48962187 ~ 49006710 (+)
G813071 NA other upstream 2084424 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 2473822 48545454 ~ 48570593 (+)
G815610 NA other downstream 21515 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 288440 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 1266339 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 1669489 52692676 ~ 52734929 (+)
G819897 NA other downstream 3669939 54726871 ~ 54727376 (+)

Expression


Co-expression Network