XLOC_026755 (samd1a)


Basic Information

Item Value
gene id XLOC_026755
gene name samd1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49425793 ~ 49447949 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052075
AATGTGATCAACGCACGCGTACAGTATGTTTCCGTTTTTTCTCCAGCGCGCTCGCACCGCGGCTCGAAAGACTGCGAGCGTCACGTCAGAGGCAACATTGACGCACTTCATCCACTCCAGCGAGCCCGAAGCCCGGCAAGAATAATGTCTGAGCCGTACCGCGAATGGATCCTGGGCTCCATAGACTCGCTGAGGTCGAGGAAAGCGCGTCCGGACCTGGATAGGATCTGCAGAATGGTGAAAAGACGACACGGCTCGGACTGGGACCGAACCCGGTCAGAGCTGGAGAAACTGATAGAGGAGCAAGCGGTGCTCAAAGTCAACTATAAAGGCTCGGTTTCCTATCGCAACGCGGCCAAGGTGCTTAGAGGCAGGAGGAGAACCGAGCAGAGCAAGTGTGCGGGCAAACAGCCTTCTCCCGCGGACTGGAGCGCCGGCGACAGCGCGCAGGGTCCCGTGGATGAGGATCACATGGAGGACATGGAAGATGAGATGTCCACGACTGCCGGAATGGACAGCAGTATGGACGAGGAGGGGGACGAGAGCAGTCTGGATGCCATGTGTGCTCAGAGCACCGCTGACTCGGGCATCAGCATGAGCCCCATCACCAGCAGTAACACCAGTCTGCCTTTGCCCTCACCCACGTCCTCCAAGAACTCTCCTACCCATGATGATCTGCGGCAGGAGGCCGACAGCGCTTACACTCTGCCTGAGCACATGCAGCCCTCAGGCCAGCAGGACACAGGCTGTGTGGTGTTGGTGCAGCAGCCGCAGGCCATCTGTCTCCCGGTTCTGAAAGTGGAGGATGGGCTGCAGGCAGAGGAGAGCACACTCACCCATGATGAGCTGATGTCAGAGCGCACTGTCACCCTGGATGAGGCGGTGAAGTCAGACGGAGGCTCTCATGCTGTCTCTGATCACACCGAGGAGGGTGAAATTTGCAATAAAGAATCCAAGAGCGTGGCCGAGGAAGAAACCATTAACAGTGGAGAGATAAATAATGGAAATGATGTGATAAAAGAAGAGATAAGCCAGGACCCTCTGCTGTGGAGCGTGGCTGATGTGGCCAGATACTTCACGTCTGTGGGCTTCCCTGAGCAGGCGCTGGCTTTCAGGACACAGGAAATAGATGGCAAGTCTTTACTGCTGATGCAGCGCAGCGATGTTTTGACTGGTTTATCGATCAGACTCGGCCCTGCACTCAAAATCTACGAGAACCACGTGAAGGTTCTGCAGAGAAGCCACTTTCAGGAGGACGGGCGTCTCTTCTCCTCCTAGTGCTCGCTCTCCGTGAATACAGACTCAATCCTCACAGCAGAGGAGTTTAACTCTTTCAGACTCGATTTGCACAATCCTTCTCATCTGACCTGCTCTTCTTCTTGATGAGGACGTGTTTCAGCCCTACAGTCTCGCTGTTTCCGTCTGTCCATCCCTCACAGGGCTGATGGGACCATTCGTCTGTGTAgaagtgttattattttattttttcagtggtGGAGCTTTTCATTCGCCAGTGTTTTTTTCCCtctgttctgttttttttctgtcgTCGGATATAATTTACAAGTGTCGCAATATTATATAAACTTGTTTGTGTCCAATTAAATGTTCAACAATGTTTTACTGCAGTCTCAAAATGGACGTGCAATGTTAGGAAATAAATTCCAGTTTCAGAAACTGT

Function

symbol description
samd1a Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD1 (sterile alpha motif domain containing 1).

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-517 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD1 (sterile alpha motif domain containing 1).

Ensembl:

ensembl_id ENSDARG00000102810

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052075 True 1681 mRNA 0.53 7 49425793 49447949

Neighbor

gene id symbol gene type direction distance location
XLOC_026754 NA coding downstream 7448 49406158 ~ 49418345 (-)
XLOC_026753 si:ch73-167f10.1 coding downstream 42897 49379774 ~ 49382896 (-)
XLOC_026752 NA coding downstream 53117 49186398 ~ 49372676 (-)
XLOC_026751 dnajb1a coding downstream 262110 49150822 ~ 49163683 (-)
XLOC_026750 gipc1 coding downstream 287789 49126103 ~ 49138004 (-)
XLOC_026756 prkacaa coding upstream 11879 49459828 ~ 49504023 (-)
XLOC_026757 asf1ba coding upstream 56970 49504919 ~ 49514874 (-)
XLOC_026758 CR847534.1 coding upstream 103631 49551580 ~ 49554912 (-)
XLOC_026759 zgc:153426 coding upstream 111312 49559261 ~ 49566364 (-)
XLOC_026760 gcgra coding upstream 309629 49757578 ~ 49925313 (-)
XLOC_026748 BX784040.1 non-coding downstream 347914 49077762 ~ 49077879 (-)
XLOC_026747 NA non-coding downstream 389011 49023900 ~ 49036782 (-)
XLOC_026745 NA non-coding downstream 424500 48999903 ~ 49001293 (-)
XLOC_026761 NA non-coding upstream 486687 49934636 ~ 49937735 (-)
XLOC_026769 NA non-coding upstream 890831 50338780 ~ 50341046 (-)
XLOC_026770 NA non-coding upstream 985602 50433551 ~ 50438278 (-)
XLOC_026771 NA non-coding upstream 985844 50433793 ~ 50434423 (-)
XLOC_026773 CR812464.1 non-coding upstream 1280910 50728859 ~ 50749116 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000033_01296158_01307173 SAMD1A coding CI01000033 null 1296158 ~ 1307173 (-)