XLOC_026763 (mrpl12)


Basic Information

Item Value
gene id XLOC_026763
gene name mrpl12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50054187 ~ 50066528 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052084
TCACCATCGCAGTGCATTGTGGGTAGGTCAGGAAGCGCCAGGAGTGGAGGACGCCATGTGCTTTTGCTAAAGCCGGACTGTCAGTCACTTGCTCACCGAGAGAGTGAGTCGTTTCTCGGTCACTGTCCGCCCGTCCAGTCGCCTTTTTTGACCGCTGAGTTCCGGTTCATGATGTACTGCAGCAGACACTGCGTCCGGCTTGCGCTGCGGGCCGCTGTCAACACTCACCGACACAGTGTACAGAGGACAGCACTGTATGCCCAGCGAACACTCAAGACCAGCTCTGTCAGTGCGGTCGATGCCATCGCAACACCTCATCTAGATGGGACGCCCAAAGAATACTCGCCCAAAATCCAGCAGCTCGTCAATGACATCGCCAGCCTCACGCTCATAGAAGTGTCCGATCTCAACGAATTACTTAAGAAAACTCTGAACATTCAGGATGTTGGAATGATGTCTATGGGCTCAATGGCAGCAGTGCCAGTGGCACCTCCTGCTGAGCTCACAGAAGGACTGGCAGAGGAGGAGGTGGCACCTGCAAAGAAAGAGAAAACCCATTTTACAATAAAACTGACAGAATTCAAGGCGGCTGATAAAGTGAAGTTGATTAAAGAAGTGAAGAACTGCATGGAAGGCATAAATCTTGTACAGGCCAAGAAGCTTGTGGAATCTCTACCTCAGGAGATCCGGACAAATATTTCTAAAGACGAGGCGGAAAAACTGAAATCAGCACTTGAAGCAGCAGGAGGCACTGTGGTGCTGGAGTGAATATCTGCGTTACTACACGTGTTACCTGTCAGTCAtcgttttgttgtttttttacaaaaataattaaaagaattcTAAGATAACAATTAACGCCTTTAAAATGACCACTTGGTCAATAAGAGATTGTGTGGATGGTGAAGTCAGAATGAACTGTCAAGCTCTGATCTTGCAAACAGCTGCCATCGATGACTTTTGTCCTTTAGCTACACATGTGTTATGGGCTAAATAGACGGTGATGGTCTGTGTCTCTGAAGCTTGGTCTTTATGAAATCCACCCTGAAAATAGGATGTGTTGCTTACTGCTGGTGGTTAAATAAACTTGTTATactgtaatgtgtattttaatgAATCATCATTACTTACAGAgcaataatcaaaacaaaaacaacagtttttttgttttgtttgttttaccaaGACGTTTTGATCAAGGCGAGATCACTGGATGCTGACTGAAAATCtcaatcttcaaaaaaaaaaatgttttctatgTGAATATATGATAGATGTTGACCACCA
>TCONS_00052085
AGGAAGCGCCAGGAGTGGAGGACGCCATGTGCTTTTGCTAAAGCCGGACTGTCAGTCACTTGCTCACCGAGAGAGTGAGTCGTTTCTCGGTCACTGTCCGCCCGTCCAGTCGCCTTTTTTGACCGCTGAGTTCCGGTTCATGATGTACTGCAGCAGACACTGCGTCCGGCTTGCGCTGCGGGCCGCTGTCAACACTCACCGACACAGTGTACAGAGGACAGCACTGTATGCCCAGCGAACACTCAAGACCAGCTCTGTCAGTGCGGTCGATGCCATCGCAACACCTCATCTAGATGGGACGCCCAAAGAATACTCGCCCAAAATCCAGCAGCTCGTCAATGACATCGCCAGCCTCACGCTCATAGAAGTGTCCGATCTCAACGAATTACTTAAGAAAACTCTGAACATTCAGGATGTTGGAATGATGTCTATGGGCTCAATGGCAGCAGTGCCAGTGGCACCTCCTGCTGAGGCAGAGGAGGAGGTGGCACCTGCAAAGAAAGAGAAAACCCATTTTACAATAAAACTGACAGAATTCAAGGCGGCTGATAAAGTGAAGTTGATTAAAGAAGTGAAGAACTGCATGGAAGGCATAAATCTTGTACAGGCCAAGAAGCTTGTGGAATCTCTACCTCAGGAGATCCGGACAAATATTTCTAAAGACGAGGCGGAAAAACTGAAATCAGCACTTGAAGCAGCAGGAGGCACTGTGGTGCTGGAGTGAATATCTGCGTTACTACACGTGTTACCTGTCAGTCAtcgttttgttgtttttttacaaaaataattaaaagaattcTAAGATAACAATTAACGCCTTTAAAATGACCACTTGGTCAATAAGAGATTGTGTGGATGGTGAAGTCAGAATGAACTGTCAAGCTCTGATCTTGCAAACAGCTGCCATCGATGACTTTTGTCCTTTAGCTACACATGTGTTATGGGCTAAATAGACGGTGATGGTCTGTGTCTCTGAAGCTTGGTCTTTATGAAATCCACCCTGAAAATAGGATGTGTTGCTTACTGCTGGTGGTTAAATAAACTTGTTATactgtaa

Function

symbol description
mrpl12 Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial transcription. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; digestive system; optic tectum; optic vesicle; and pectoral fin. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 45. Orthologous to human MRPL12 (mitochondrial ribosomal protein L12).

GO:

id name namespace
GO:0006390 mitochondrial transcription biological_process
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050417-187 Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial transcription. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; digestive system; optic tectum; optic vesicle; and pectoral fin. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 45. Orthologous to human MRPL12 (mitochondrial ribosomal protein L12).

Ensembl:

ensembl_id ENSDARG00000038768

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052084 False 1287 mRNA 0.44 6 50054187 50066528
TCONS_00052085 True 1057 mRNA 0.47 5 50054373 50066499

Neighbor

gene id symbol gene type direction distance location
XLOC_026762 si:ch1073-100f3.2 coding downstream 8183 50032394 ~ 50046004 (-)
XLOC_026761 NA coding downstream 116452 49934636 ~ 49937735 (-)
XLOC_026760 gcgra coding downstream 128874 49757578 ~ 49925313 (-)
XLOC_026759 zgc:153426 coding downstream 487823 49559261 ~ 49566364 (-)
XLOC_026758 CR847534.1 coding downstream 499275 49551580 ~ 49554912 (-)
XLOC_026764 hgs coding upstream 10265 50076793 ~ 50118140 (-)
XLOC_026765 cldnk coding upstream 56979 50123507 ~ 50127668 (-)
XLOC_026766 btr02 coding upstream 61198 50127726 ~ 50147160 (-)
XLOC_026767 rasd2 coding upstream 108638 50175166 ~ 50177658 (-)
XLOC_026768 arl16 coding upstream 205434 50271962 ~ 50277959 (-)
XLOC_026754 NA non-coding downstream 635842 49406158 ~ 49418345 (-)
XLOC_026752 NA non-coding downstream 681511 49186398 ~ 49372676 (-)
XLOC_026748 BX784040.1 non-coding downstream 976308 49077762 ~ 49077879 (-)
XLOC_026747 NA non-coding downstream 1017405 49023900 ~ 49036782 (-)
XLOC_026769 NA non-coding upstream 272252 50338780 ~ 50341046 (-)
XLOC_026770 NA non-coding upstream 367023 50433551 ~ 50438278 (-)
XLOC_026771 NA non-coding upstream 367265 50433793 ~ 50434423 (-)
XLOC_026773 CR812464.1 non-coding upstream 662331 50728859 ~ 50749116 (-)
XLOC_026777 NA non-coding upstream 1193303 51259831 ~ 51273723 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G477223 NA non-coding CI01000334 null 237555 ~ 244592 (-)