XLOC_026872 (CU571382.3)


Basic Information

Item Value
gene id XLOC_026872
gene name CU571382.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58659756 ~ 58661120 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052230
AATATAATGTAGTGAAAATGCAGAATCTGTGCTGTGTTATTAATCCTAGATGTGAAGTTGAGCTCTGATCATCTGTTGTGTAAAAGCAGAAGTGAATGTGAGCATTGAGGAGGTTTTTGTCATGATGTGAATCACTGTGATACCCACTCTTTAGCAGAGCTGTCATATGTCTAACAGTAATACACTGCAGAATCACTCACATCCACATTACGTATGATCAGACTATAATCTGATTTAGATGAATGTGTTGATGTGAATTTAGGAGCAGAGAAACCAGATCCATAGCTAGGTGATCTCCAGCCATGATAAAATCTTAACACATACTGAGGAACTCCTGCTGCAGTCTGCTTGTACCATCTAGCTTCAGAATCAGTCACAGTGCCCAGATTACAGTCCAGTTGAGCGGTTTGTCCTTTACTGACTGTGATTACTGGACTCTGAGTCACTACAGTCACTCCACTGACACCTGCAGAACAAACACAAGCTTTACATGAGATCGTGTGTCCAACACTTTAAACTGTCCATCAGACATGAGGAAACTCACAGGTCAGAAGAGTGCAGACAGAGCAGAATATTGAGATCATCTTGTGATTTGGTGTCTGTGACGTGTAAAGATGAGCAGTGCTGTAGAATAAAGCTGAGATGATCAGAGAGAGAAACTTGAAGACTGTAGAGACACTAAAAGAGACGCCCGCCTCAGTTTCACAGTCATTTACATAAACCTGCTGAGATAACAGGTGTCTCCTGAGCGTGCGCATGTACAGTTATGTGAGTCAGGGTTCACTGCATCCACTTCAGGTCATAATTCACGTCTCTCTGCTCTTCATTGATGTGTGTTTTATGCAGATAAACATCAGGAAGAGCAGAAAACAGTCACTAATTCTAGAGCAATATCAGATGAATCCCACACATAATCCTCTCTagctgtggtttgtaatgaagGTGTAAATGTTTTAGTGAGTTTGTTCTGTATCTGCAGGGCTGAAGATGTGCTGTGAGGATCTGACTTCAGTAAGGatcagacccgggtctcctgTGCTCTGACTCTCAGCTCTTCTAAACTGAGCTTCACTTCACAATGACTGAATTCAGGAGCAGAAGATGAAGAAGCCGTCTAAAGCGGTCGAGTTCAGTAAAAGAAGAAACTAATTCTTCAGTCAGagacacaaaataataaatgaaACTTCATTTCTCAGCATTTCTCCACTAACAGAAGCTCAAAACTGAACTGATAAAGCTTTAGACAGGAGCTGCTCTTCTGCCACTAATAATTCACTGTGTTAAGCACTGATATTAGAGTTAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097603

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052230 True 1303 lncRNA 0.41 2 58659756 58661120

Neighbor

gene id symbol gene type direction distance location
XLOC_026870 dhrs7ca coding downstream 9699 58633692 ~ 58650057 (-)
XLOC_026868 NA coding downstream 32212 58565159 ~ 58627544 (-)
XLOC_026869 CABZ01038524.1 coding downstream 41937 58608169 ~ 58617819 (-)
XLOC_026866 NA coding downstream 64025 58555303 ~ 58595731 (-)
XLOC_026873 CU571382.2 coding upstream 8530 58669650 ~ 58670942 (-)
XLOC_026874 NA coding upstream 33570 58694690 ~ 58696104 (-)
XLOC_026875 si:ch73-281f12.4 coding upstream 53621 58714741 ~ 58798815 (-)
XLOC_026876 luc7l3 coding upstream 144670 58805790 ~ 58823762 (-)
XLOC_026877 CU570684.1 coding upstream 167221 58828341 ~ 58831683 (-)
XLOC_026867 NA non-coding downstream 100575 58557312 ~ 58559181 (-)
XLOC_026864 NA non-coding downstream 160728 58497271 ~ 58499028 (-)
XLOC_026863 NA non-coding downstream 183026 58472346 ~ 58476730 (-)
XLOC_026881 NA non-coding upstream 1210406 59871526 ~ 59883486 (-)
XLOC_026884 NA non-coding upstream 1374981 60036101 ~ 60055759 (-)
XLOC_026885 NA non-coding upstream 1406262 60067382 ~ 60068951 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G477161 NA non-coding CI01000334 null 11651 ~ 17011 (-)