XLOC_026885


Basic Information

Item Value
gene id XLOC_026885
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60067382 ~ 60068951 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053176
agacatcgcaaatgataaatcaaatgcaaatgaggtgtCAATCAACCAGCATAGGCGGAGCTTTAAGGCGGAAGAGTTTGTTGTTGACAACAACCGGTAGCGCTACGACTTTTTCAAGGCGTTCAGATTTGCGTGCACTATTCCATGTCGTATCCGTATAAACTCGTGAAAGAGAAAGCGAGAAATCTCCTACTGCTTCTGTCCACATTCTGAAGTGTTCATCAGATGGGTACATCTATCACAGGAGGCCACGAAAAACCATACGGCAAGATGATGATGCTACGTCACAATGTGGAAAACTGGATGGATTTAGACATCTTACATGTAAGTAATTAAATCCAGAAAGACGGTTCCTTGAGTTAAGTTACAGTAAAATAGCGATAGTTGAGCTACTGTACAGTGAACTGTAGAATTACTGAAAGTGTaaagatttacagtatatttattttatcttgctgTAAATTATCACGTAGGAACTTCTGTAAGCACATAACGTTACGTTTCAAACGTTACATAAAGACGATTATTCAATGTCTGACAGAAAAATATAGGAGGTATTGCAGATTAGCAAATTATAACATTAAACAGACGTCTGAGTGATTTGTTTGTGCTGATGTAGAATGCACTTTTGTCAATACAGCTTAGGTGAgatacatgtaatattaatacagtaATGTTTTCTTCTGTTCAGTTGGTGATACATTTATGAAAGTATAATTTGAGCACACAAATCACAGAGGTAACGTGACTTGTCTGGTTGTGATAGAGAAGGAAGCACACATGTTTGTGTGTTAGCTGATGCAGAGTGACTGAACAAATGCTACCATCAtatttgtttaacaaaatattgttgtttcAAACCGCTATTACAACAATTTctttaatgttgatttatatgCCATTTCTGGGCTGGAGCAGGACTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAGTAAGATCATGTTATTACTTCCAATTCAGAACTCAAATGAAACTCAAAAAGTGTGCTGTTAAATGACTTCTTTATTAAGAGCTTTGTATAATCTGAAATGTCCTCAGACTGGTGTGTgcagtgatgatgatgaagaacagCAGTGTGCTGATGAAGGAAATGTTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATACTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTTGAATAAGTTTGAATAAAGCTTAGTTTCGTATCTT
>TCONS_00053177
tcaaatcctcaaactgacatcgcaaatggtgaatcaaatgctcaaactataaatcaaatccttaaaccgacattgcaaatggtgaatcaaatgctcaaacaactctgcaaatggtgaatcaaatccttaaactgacatcgcaaatggtgaatcaaatgctcaaacagacatcgcaaatgataaatcaaatgcaaatgaggtgtCAATCAACCAGCATAGGCGGAGCTTTAAGGCGGAAGAGTTTGTTGTTGACAACAACCGGTAGCGCTACGACTTTTTCAAGGCGTTCAGATTTGCGTGCACTATTCCATGTCGTATCCGTATAAACTCGTGAAAGAGAAAGCGAGAAATCTCCTACTGCTTCTGTCCACATTCTGAAGTGTTCATCAGATGGGTACATCTATCACAGGAGGCCACGAAAAACCATACGGCAAGATGATGATGCTACGTCACAATGTGGAAAACTGGATGGATTTAGACATCTTACATGACTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAACTGGTGTGTgcagtgatgatgatgaagaacagCAGTGTGCTGATGAAGGAAATGTTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATACTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTTGAATAAGTTTGAATAAAGCTTAGTTTCGTATCTT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053176 False 1405 lncRNA 0.39 1 60067382 60068786
TCONS_00053177 True 869 lncRNA 0.43 3 60067382 60068951

Neighbor

gene id symbol gene type direction distance location
XLOC_026884 NA coding downstream 11623 60036101 ~ 60055759 (-)
XLOC_026883 recql5 coding downstream 40074 59986120 ~ 60027308 (-)
XLOC_026882 cdr2l coding downstream 85906 59951010 ~ 59981476 (-)
XLOC_026881 NA coding downstream 183896 59871526 ~ 59883486 (-)
XLOC_026880 nptx1l coding downstream 594960 59453467 ~ 59472422 (-)
XLOC_026886 NA coding upstream 57576 60126527 ~ 60127561 (-)
XLOC_026887 si:ch211-120g10.1 coding upstream 60897 60129848 ~ 60142530 (-)
XLOC_026888 si:ch73-364h19.1 coding upstream 77358 60146309 ~ 60175470 (-)
XLOC_026889 si:ch211-214b16.3 coding upstream 216164 60285115 ~ 60308937 (-)
XLOC_026890 si:ch211-214b16.2 coding upstream 245323 60314274 ~ 60316118 (-)
XLOC_026874 NA non-coding downstream 1371278 58694690 ~ 58696104 (-)
XLOC_026871 FP016018.3 non-coding downstream 1394216 58654063 ~ 58673166 (-)
XLOC_026892 AL954150.1 non-coding upstream 382549 60451500 ~ 60451628 (-)
XLOC_026895 NA non-coding upstream 525184 60594135 ~ 60602432 (-)
XLOC_026899 NA non-coding upstream 788071 60857022 ~ 60861145 (-)
XLOC_026901 NA non-coding upstream 880617 60949568 ~ 60956010 (-)

Expression


Co-expression Network