Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_026895 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 60594135 ~ 60602432 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | biological_process |
| GO:0019222 | regulation of metabolic process | biological_process |
| GO:0080090 | regulation of primary metabolic process | biological_process |
| GO:0051171 | regulation of nitrogen compound metabolic process | biological_process |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0009888 | tissue development | biological_process |
| GO:0009889 | regulation of biosynthetic process | biological_process |
| GO:0031323 | regulation of cellular metabolic process | biological_process |
| GO:0031326 | regulation of cellular biosynthetic process | biological_process |
| GO:1904029 | regulation of cyclin-dependent protein kinase activity | biological_process |
| GO:0060255 | regulation of macromolecule metabolic process | biological_process |
| GO:0003002 | regionalization | biological_process |
| GO:0000307 | cyclin-dependent protein kinase holoenzyme complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0019887 | protein kinase regulator activity | molecular_function |
| GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity | molecular_function |
| GO:0097159 | organic cyclic compound binding | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:1901363 | heterocyclic compound binding | molecular_function |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0001067 | regulatory region nucleic acid binding | molecular_function |
| GO:1990837 | sequence-specific double-stranded DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-2420 | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nuclear speck. Human ortholog(s) of this gene implicated in acute myeloid leukemia and myelodysplastic syndrome. Orthologous to human SRSF2 (serine and arginine rich splicing factor 2). |
| ensembl_id | ENSDARG00000103893 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00052509 | False | 1199 | lncRNA | 0.55 | 4 | 60594135 | 60602432 |
| TCONS_00052257 | True | 3553 | mRNA | 0.42 | 3 | 60594138 | 60602432 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_026894 | jmjd6 | coding | downstream | 4843 | 60575113 ~ 60589292 (-) |
| XLOC_026893 | si:ch73-366l1.5 | coding | downstream | 22917 | 60525982 ~ 60571218 (-) |
| XLOC_026892 | AL954150.1 | coding | downstream | 142507 | 60451500 ~ 60451628 (-) |
| XLOC_026891 | si:ch211-214b16.4 | coding | downstream | 192309 | 60338988 ~ 60401826 (-) |
| XLOC_026890 | si:ch211-214b16.2 | coding | downstream | 278017 | 60314274 ~ 60316118 (-) |
| XLOC_026896 | ubald2 | coding | upstream | 82477 | 60684909 ~ 60711127 (-) |
| XLOC_026897 | anks4b | coding | upstream | 210419 | 60812851 ~ 60827402 (-) |
| XLOC_026898 | DXO | coding | upstream | 248617 | 60851049 ~ 60856157 (-) |
| XLOC_026899 | NA | coding | upstream | 254590 | 60857022 ~ 60861145 (-) |
| XLOC_026900 | PITPNC1 | coding | upstream | 260009 | 60862441 ~ 60888183 (-) |
| XLOC_026886 | NA | non-coding | downstream | 466574 | 60126527 ~ 60127561 (-) |
| XLOC_026885 | NA | non-coding | downstream | 525184 | 60067382 ~ 60068951 (-) |
| XLOC_026884 | NA | non-coding | downstream | 538376 | 60036101 ~ 60055759 (-) |
| XLOC_026881 | NA | non-coding | downstream | 710649 | 59871526 ~ 59883486 (-) |
| XLOC_026901 | NA | non-coding | upstream | 347136 | 60949568 ~ 60956010 (-) |
| XLOC_026917 | NA | non-coding | upstream | 1196691 | 61799123 ~ 61844869 (-) |
| XLOC_026921 | NA | non-coding | upstream | 1596756 | 62199188 ~ 62201944 (-) |
| XLOC_026922 | NA | non-coding | upstream | 1629636 | 62232068 ~ 62241733 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | G509651 | NA | unknown | CI01000351 | null | 1156090 ~ 1156361 (-) |
| eurasian perch (Perca fluviatilis) | G26385 | NA | non-coding | NC_053114.1 | CM020911.1 | 9736811 ~ 9737046 (-) |
| tiger barb (Puntius tetrazona) | srsf2b | srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 | misc | NC_056701.1 | CM032070.1 | 26798431 ~ 26801401 (+) |
