XLOC_026898 (DXO)


Basic Information

Item Value
gene id XLOC_026898
gene name DXO
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60851049 ~ 60856157 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052260
gtGCTGTTCCCTCCTATCTGTTTACACGCTAACAACAGTGTGCTCAGTTATTTTTGTTGAGGTAActtatgtttcatatttttatagatCAAATATACAATATCTCTACAGGATGTTCGCTAATTTTGTCGAGAGTATCACTCAACCTGACCGCATTCATTCATTAGCTTAAGTTAACTCTTAGCAGAAACGTTAGCATTAGTGTTTAACCCATCAGAAAATACTATCTAAAAGCACAACACAATGGCTCAGGGTTACCGCAGAGATCACAATCATCGTCATGAGTCGGGTTATAAGAGACCCAGTGACCCGGGCGGTGATCTGCCGAGCGATAAACGACACCGACCGCCGCCCGCTGAAGGCCGGACTCTGAGCGCTGACCGCCGGCTATACGAGAGACATTTCCCGCTGTACAAGCAGCCGCTGGAGGTGGGCTGTTTTTCGCTGGACGCCCGCAGAAACTTCTTTAACGACCACAGGCAGCTACGGTATTATGTGGAGCCCCGGAGGAGCCCGGACTTTAACCTCAGAGACGGATACACGAGCCGGTTTATAAAGAGAGACGATGGCGTGAAGGAGAAGCTGGACCACATGCTGAGGTGGATCCTGGAGAACAGACACAAGATGCAGAACAGCAACTCCAGCAGCTGTGCTCTGGGCGTGGATTTCGTCACATGGAGAGGACACCTGACCAAAGTGCTGACCACCCCGTACGAGACCCAGGAGGGCTGGATGATGGCGGCCTGCAAGTTTAGAGGCAGCATCTACATCAGCGAGGTGGAGACGGAGCAGGCGAGAGAGAACCGAGAAACACGCTCCGAGCGGCAGGAGGAGATGATGTACTGGGGATATAAGTTTGAGCAGTACACATGCGCAGATGGTGCAGACGGGACTCCAGACCCAGGGGGTGTTGTGAACACCAACGAGGCCTTCTGTACGGTGGTTCAGACGCGTCTGGCTGACCATAAGCTGCTGTTTTCTGGAGAGGTGGACTGCCGCCTGAAAGACCCCGATGCTCCTCCGGCT

Function

symbol description
dxo Predicted to enable several functions, including bis(5'-nucleosyl)-tetraphosphatase activity; metal ion binding activity; and nucleotide binding activity. Predicted to be located in nucleus. Orthologous to human DXO (decapping exoribonuclease).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-286 Predicted to enable several functions, including bis(5'-nucleosyl)-tetraphosphatase activity; metal ion binding activity; and nucleotide binding activity. Predicted to be located in nucleus. Orthologous to human DXO (decapping exoribonuclease).

Ensembl:

ensembl_id ENSDARG00000036852

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052260 True 1026 mRNA 0.52 3 60851049 60856157

Neighbor

gene id symbol gene type direction distance location
XLOC_026897 anks4b coding downstream 23647 60812851 ~ 60827402 (-)
XLOC_026896 ubald2 coding downstream 139922 60684909 ~ 60711127 (-)
XLOC_026895 NA coding downstream 248617 60594135 ~ 60602432 (-)
XLOC_026894 jmjd6 coding downstream 261757 60575113 ~ 60589292 (-)
XLOC_026893 si:ch73-366l1.5 coding downstream 279831 60525982 ~ 60571218 (-)
XLOC_026899 NA coding upstream 865 60857022 ~ 60861145 (-)
XLOC_026900 PITPNC1 coding upstream 6284 60862441 ~ 60888183 (-)
XLOC_026901 NA coding upstream 93411 60949568 ~ 60956010 (-)
XLOC_026902 cacng1b coding upstream 187617 61043774 ~ 61065055 (-)
XLOC_026903 cacng4b coding upstream 221900 61078057 ~ 61099004 (-)
XLOC_026892 AL954150.1 non-coding downstream 399421 60451500 ~ 60451628 (-)
XLOC_026886 NA non-coding downstream 723488 60126527 ~ 60127561 (-)
XLOC_026885 NA non-coding downstream 782098 60067382 ~ 60068951 (-)
XLOC_026884 NA non-coding downstream 795290 60036101 ~ 60055759 (-)
XLOC_026917 NA non-coding upstream 942966 61799123 ~ 61844869 (-)
XLOC_026921 NA non-coding upstream 1343031 62199188 ~ 62201944 (-)
XLOC_026922 NA non-coding upstream 1375911 62232068 ~ 62241733 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000351_01428897_01433530 NA coding CI01000351 null 1427820 ~ 1434268 (-)