XLOC_026886


Basic Information

Item Value
gene id XLOC_026886
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60126527 ~ 60127561 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053178
ttctttgggtgctctggtttcccccacagtccaaagacatgcagtacaggtaaattgggtaggctaaattgtcctttaCAAATGCCTGGTTTATTTTTGGTTGCTAGGTTGCCAATCCTACAGTCAGCCTCTCTAACAACTTGACAAATAAACACTAACCTAACAAACATTACACCAACATGACCAATCAGCCGTCTTTACTATGcctgccttgtttactgttggttgctaggttaccaatactacagttagCCACTCAAACAACTTGACAAATAATCTCTGACATAGCGAACATTACACCCACATGACCAATCAGCCGTCTCCATTATGACTGCCTTGTTTAtttttggttgctaggttaccaatgcTACAGTCAGCCACTTCGCCAccttattttgctttgtttatgcTAACTTTGAAAAAATTCGCTTCACGTTTAGATGCAAACCTGACTATTGTTCCTTTCGAATTTGCACAATTCTTATAGTATGGTTATTTCTAAACGCTCTCTTATTGAAAGCACTTTGTAAATATGAACTTAATAGAAAACATTCAGTGTCACGGTTGACTAAACTGCACCGATGGTTTTTCGAAACCTTTTAAAGAACTTTGCTTGAAACTAATCTGAAGTGTCTAACAATTTGCATATTGTTGATCTTGAGCACTTTATAGAACAATTTAAGACATTAAATGTGTGATGCGTAGAACTGTTTTTGACAACTAAACATAATTAGCCCCTTGTTTGGTCGTCCTGACGgaaaaccagttgagaaccagtGCTCTAGTCCATTACTGGGCTGCGTTAGATATCAGTTTGTAGTGATTAACTGTGATCCATAGCAGTAAAGCCCAGTAAATCCATTAAAGTAGTGTACAATCTCTTCCAGCTGCTGCTTCTGTGGTACTTCTGCACCTTATTATATGTAACGCAGTGTTCACCTGCCCTGTCTGCACCTTCACATTCATCTCACACGCTCAACATCATGATATATGAACATGCACTTTATGCCAATAATAAATGGAAATGAGCTCAAA

Function

GO:

id name namespace
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0008241 peptidyl-dipeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053178 True 1035 lncRNA 0.39 1 60126527 60127561

Neighbor

gene id symbol gene type direction distance location
XLOC_026885 NA coding downstream 57576 60067382 ~ 60068951 (-)
XLOC_026884 NA coding downstream 70768 60036101 ~ 60055759 (-)
XLOC_026883 recql5 coding downstream 99219 59986120 ~ 60027308 (-)
XLOC_026882 cdr2l coding downstream 145051 59951010 ~ 59981476 (-)
XLOC_026881 NA coding downstream 243041 59871526 ~ 59883486 (-)
XLOC_026887 si:ch211-120g10.1 coding upstream 2287 60129848 ~ 60142530 (-)
XLOC_026888 si:ch73-364h19.1 coding upstream 18748 60146309 ~ 60175470 (-)
XLOC_026889 si:ch211-214b16.3 coding upstream 157554 60285115 ~ 60308937 (-)
XLOC_026890 si:ch211-214b16.2 coding upstream 186713 60314274 ~ 60316118 (-)
XLOC_026891 si:ch211-214b16.4 coding upstream 211427 60338988 ~ 60401826 (-)
XLOC_026874 NA non-coding downstream 1430423 58694690 ~ 58696104 (-)
XLOC_026873 CU571382.2 non-coding downstream 1455585 58669650 ~ 58670942 (-)
XLOC_026892 AL954150.1 non-coding upstream 323939 60451500 ~ 60451628 (-)
XLOC_026895 NA non-coding upstream 466574 60594135 ~ 60602432 (-)
XLOC_026899 NA non-coding upstream 729461 60857022 ~ 60861145 (-)
XLOC_026901 NA non-coding upstream 822007 60949568 ~ 60956010 (-)
XLOC_026917 NA non-coding upstream 1671562 61799123 ~ 61844869 (-)

Expression


Co-expression Network