XLOC_026882 (cdr2l)


Basic Information

Item Value
gene id XLOC_026882
gene name cdr2l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 59951010 ~ 59981476 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052241
GGGAGAAAGCAACGGGATGTTGTGGGAGCTCGGATGAGGAGCGATATCTGCGCTTAGCACGGCGGTGGGAGGGGTTCAGTGTGACAGAGCCCAATGGCAGCAGAAGACTGACATTTCCTTCATTTCTCGCAGGAAATTTCTCTTTGGCATGACGGAGACACCGAATAACGGAGCGTGTCTTTGCGATCGCCGCATCTCTGAGCTTCCGGGCGGCCGTTAAAAACGAAAAACGCACCGCGACAAACTGATGCTCCGAGCCGGCAGGATGGACGAGTTTGTGACGGAAGAGGACGAGCCGTGGTACGACCAGAGAGACCTGGAGCAAGATCTGCACCTGGCAGCCGAGCTGGGCAAAACCCTGCTGGAGCGCAATAAGGAGCTGGAGGACTCGCTGCAGCAGATGTACATCAACAATGAAGAGCAGGTGCAGGAAATCGAGTACTTGACCAAGCAGATGGAGATGTTGCGAGAGATGAACGAGCAGCACGCTAAAGTGTACGAGCAGCTGGATGTGACGGCCAGAGAGCTGGAGATAACCAACGAGAAACTGGTGCTGGAGAGCAAAGGTTCACAGCAGAAGATTGACAGACTGACCGGTACTATGGAGATGCTGCAGGGTCAGGTGGACACGCTCACGGCTCGCGTGGAGGAGCTGCGCACGCTGGAGGAGCTCAGGGTTCGCCGGGAGAAGAAGGAGCGCAGGAAGACTGTGCACTCCTTCCCCTGCCTCAAAGAGCTCTGCACCGCCCCCAGGTATGAGGATAGTTTCATGGTGTCCGACCCCGGTAGCGGAGACCTGGAGGAATGTCAGCCGGCGGACGAAGAGAACGAGCATCTGCGCGTGATGGTTTCCTCTCTGCGTGCAGCAGTGGCGGCTGAACGCGGGCGGCGGGAGGCTGCGGAGAGGGAGTGTGCCGCGGTGCTCCAGGAGTTTGAGCGTCTGGAACAGCGCCTCCTGGGGGCTGAGAGCTGTCAGCGGCGCGTGCACGAGCTGGAGGCAGAGCTTCAGGAGATGCAGCAGCTCCGCAAGTCTCGCGTATGTCTGCTGAGCGGAGAGGAAGGCTTGGAGCAGACGCTGCTTAACTGTGCACCAGAGACCGACACTCCAGACGAGGCGGTGATGGCGCAGAACGGGGACGCTAATGACGGAGCTGCACCTGTGCGCAAGAGCTGCAGCGACACCGCTCTGGATGCCATCTCTGCGGTTGATGCCTCAGGGAGACGCAAAGGCAGCTACGCGCTACATGCTAACGGCGTCCGCAAGAGAGGCATGTCCATCCTGCGGGAGGTGGACGAACAGTATCACGCACTTCTAGAGAAATACGAGGAGCTTCTAGGAAAGTGTCGTCGCCACGAGGAGAGTCTGCGGCACGCTGAAGTCCAAACATCTCGGCCTGTGTCCAGAGACCCGTCCATGAAGGAGTGCCGGGTCGCGGAGCCACAGCAGCCACCACCAACACCTCCGCAGACGCCCTCGACTCCTGAAGCTCTGGAGGGCATCAGCCGGCAGGTGGAGGCGGTGGACAAACGGCTGAGCCAGAACACGCCAGAGTACAAAGCCCTCTTCAAGGAGATCTTCTCCCGCTTGCAGAGGACCAAGAGCGATATAAACTCCACCAAAGGGAGGAAAGGTGGGAAATAGACCACTCCCCCACATAGACATCTGATACATGgcaaaatatatatgcaaatcaCGTCATGTGATTTGCATGTACGTCCATGTATCAGATCCTATATGGGTCTGCTCTTAACTTCTGTGCCACTGGTTTCTTTCCCTGGTTGTTCATGTAATGTCTTAACTTTTCTTTAGGAAACTGCGCCAGCGATATTTAGCGATGGCTGTTATTTAGTGCGACTCATCCCTGAACCTTTTGGTGCCACTGATATGAAGATAAATGGTGGTTTTCTATTAACAGGATGCTCGTCTTTTGCGTCTGATGTGCTTTTTTGCCAGGTTGGCCTTTTAGGGTAGACCATATTACTCTCTTGGTTTAACTGTAACCATATTCATCCTAATGTCGATCAGCACAGGAAGACATGATGCTTATCCTTGCTGATCGTTTCCTTTCTCACATGTATCACGTCATGGATAATCACAGCCTTGTGTAACCACTTTTGTTCAATATTAAATCACACTTTGCTTT
>TCONS_00052240
GGGAGAAAGCAACGGGATGTTGTGGGAGCTCGGATGAGGAGCGATATCTGCGCTTAGCACGGCGGTGGGAGGGGTTCAGTGTGACAGAGCCCAATGGCAGCAGAAGACTGACATTTCCTTCATTTCTCGCAGGAAATTTCTCTTTGGCATGACGGAGACACCGAATAACGGAGCGTGTCTTTGCGGTGAGTTTAGCGTGAGCGCGCGCGCTGTCATCATTTAACGGTCGCTTCAGCGCGGAGCCTGCTCCAGACGGACATCCACAAAACACAAAACCGTGAAAATAGGTGTTTAAAGTGTGTTTTAGGGAAGTGCCCGTGTAAGTGTACTGCACGAACGCCTTGTAAACTCGCATATAACGCAGTCTCACGTCATGTATGTTTGATATCGCTTTAGTAGATCGCCGCATCTCTGAGCTTCCGGGCGGCCGTTAAAAACGAAAAACGCACCGCGACAAACTGATGCTCCGAGCCGGCAGGATGGACGAGTTTGTGACGGAAGAGGACGAGCCGTGGTACGACCAGAGAGACCTGGAGCAAGATCTGCACCTGGCAGCCGAGCTGGGCAAAACCCTGCTGGAGCGCAATAAGGAGCTGGAGGACTCGCTGCAGCAGATGTACATCAACAATGAAGAGCAGGTGCAGGAAATCGAGTACTTGACCAAGCAGATGGAGATGTTGCGAGAGATGAACGAGCAGCACGCTAAAGTGTACGAGCAGCTGGATGTGACGGCCAGAGAGCTGGAGATAACCAACGAGAAACTGGTGCTGGAGAGCAAAGGTTCACAGCAGAAGATTGACAGACTGACCGGTACTATGGAGATGCTGCAGGGTCAGGTGGACACGCTCACGGCTCGCGTGGAGGAGCTGCGCACGCTGGAGGAGCTCAGGGTTCGCCGGGAGAAGAAGGAGCGCAGGAAGACTGTGCACTCCTTCCCCTGCCTCAAAGAGCTCTGCACCGCCCCCAGGTATGAGGATAGTTTCATGGTGTCCGACCCCGGTAGCGGAGACCTGGAGGAATGTCAGCCGGCGGACGAAGAGAACGAGCATCTGCGCGTGATGGTTTCCTCTCTGCGTGCAGCAGTGGCGGCTGAACGCGGGCGGCGGGAGGCTGCGGAGAGGGAGTGTGCCGCGGTGCTCCAGGAGTTTGAGCGTCTGGAACAGCGCCTCCTGGGGGCTGAGAGCTGTCAGCGGCGCGTGCACGAGCTGGAGGCAGAGCTTCAGGAGATGCAGCAGCTCCGCAAGTCTCGCGTATGTCTGCTGAGCGGAGAGGAAGGCTTGGAGCAGACGCTGCTTAACTGTGCACCAGAGACCGACACTCCAGACGAGGCGGTGATGGCGCAGAACGGGGACGCTAATGACGGAGCTGCACCTGTGCGCAAGAGCTGCAGCGACACCGCTCTGGATGCCATCTCTGCGGTTGATGCCTCAGGGAGACGCAAAGGCAGCTACGCGCTACATGCTAACGGCGTCCGCAAGAGAGGCATGTCCATCCTGCGGGAGGTGGACGAACAGTATCACGCACTTCTAGAGAAATACGAGGAGCTTCTAGGAAAGTGTCGTCGCCACGAGGAGAGTCTGCGGCACGCTGAAGTCCAAACATCTCGGCCTGTGTCCAGAGACCCGTCCATGAAGGAGTGCCGGGTCGCGGAGCCACAGCAGCCACCACCAACACCTCCGCAGACGCCCTCGACTCCTGAAGCTCTGGAGGGCATCAGCCGGCAGGTGGAGGCGGTGGACAAACGGCTGAGCCAGAACACGCCAGAGTACAAAGCCCTCTTCAAGGAGATCTTCTCCCGCTTGCAGAGGACCAAGAGCGATATAAACTCCACCAAAGGGAGGAAAGGTGGGAAATAGACCACTCCCCCACATAGACATCTGATACATGgcaaaatatatatgcaaatcaCGTCATGTGATTTGCATGTACGTCCATGTATCAGATCCTATATGGGTCTGCTCTTAACTTCTGTGCCACTGGTTTCTTTCCCTGGTTGTTCATGTAATGTCTTAACTTTTCTTTAGGAAACTGCGCCAGCGATATTTAGCGATGGCTGTTATTTAGTGCGACTCATCCCTGAACCTTTTGGTGCCACTGATATGAAGATAAATGGTGGTTTTCTATTAACAGGATGCTCGTCTTTTGCGTCTGATGTGCTTTTTTGCCAGGTTGGCCTTTTAGGGTAGACCATATTACTCTCTTGGTTTAACTGTAACCATATTCATCCTAATGTCGATCAGCACAGGAAGACATGATGCTTATCCTTGCTGATCGTTTCCTTTCTCACATGTATCACGTCATGGATAATCACAGCCTTGTGTAACCACTTTTGTTCAATATTAAATCACACTTTGCTTT
>TCONS_00052242
CCCGTTAGATCGCCGCATCTCTGAGCTTCCGGGCGGCCGTTAAAAACGAAAAACGCACCGCGACAAACTGATGCTCCGAGCCGGCAGGATGGACGAGTTTGTGACGGAAGAGGACGAGCCGTGGTACGACCAGAGAGACCTGGAGCAAGATCTGCACCTGGCAGCCGAGCTGGGCAAAACCCTGCTGGAGCGCAATAAGGAGCTGGAGGACTCGCTGCAGCAGATGTACATCAACAATGAAGAGCAGGTGCAGGAAATCGAGTACTTGACCAAGCAGATGGAGATGTTGCGAGAGATGAACGAGCAGCACGCTAAAGTGTACGAGCAGCTGGATGTGACGGCCAGAGAGCTGGAGATAACCAACGAGAAACTGGTGCTGGAGAGCAAAGGTTCACAGCAGAAGATTGACAGACTGACCGGTACTATGGAGATGCTGCAGGGTCAGGTGGACACGCTCACGGCTCGCGTGGAGGAGCTGCGCACGCTGGAGGAGCTCAGGGTTCGCCGGGAGAAGAAGGAGCGCAGGAAGACTGTGCACTCCTTCCCCTGCCTCAAAGAGCTCTGCACCGCCCCCAGGTATGAGGATAGTTTCATGGTGTCCGACCCCGGTAGCGGAGACCTGGAGGAATGTCAGCCGGCGGACGAAGAGAACGAGCATCTGCGCGTGATGGTTTCCTCTCTGCGTGCAGCAGTGGCGGCTGAACGCGGGCGGCGGGAGGCTGCGGAGAGGGAGTGTGCCGCGGTGCTCCAGGAGTTTGAGCGTCTGGAACAGCGCCTCCTGGGGGCTGAGAGCTGTCAGCGGCGCGTGCACGAGCTGGAGGCAGAGCTTCAGGAGATGCAGCAGCTCCGCAAGTCTCGCGTATGTCTGCTGAGCGGAGAGGAAGGCTTGGAGCAGACGCTGCTTAACTGTGCACCAGAGACCGACACTCCAGACGAGGCGGTGATGGCGCAGAACGGGGACGCTAATGACGGAGCTGCACCTGTGCGCAAGAGCTGCAGCGACACCGCTCTGGATGCCATCTCTGCGGTTGATGCCTCAGGGAGACGCAAAGGCAGCTACGCGCTACATGCTAACGGCGTCCGCAAGAGAGGCATGTCCATCCTGCGGGAGGTGGACGAACAGTATCACGCACTTCTAGAGAAATACGAGGAGCTTCTAGGAAAGTGTCGTCGCCACGAGGAGAGTCTGCGGCACGCTGAAGTCCAAACATCTCGGCCTGTGTCCAGAGACCCGTCCATGAAGGAGTGCCGGGTCGCGGAGCCACAGCAGCCACCACCAACACCTCCGCAGACGCCCTCGACTCCTGAAGCTCTGGAGGGCATCAGCCGGCAGGTGGAGGCGGTGGACAAACGGCTGAGCCAGAACACGCCAGAGTACAAAGCCCTCTTCAAGGAGATCTTCTCCCGCTTGCAGAGGACCAAGAGCGATATAAACTCCACCAAAGGGAGGAAAGGTGGGAAATAG

Function

symbol description
cdr2l Is expressed in several structures, including nervous system; neural plate; otic vesicle; presumptive diencephalon; and presumptive telencephalon. Orthologous to human CDR2L (cerebellar degeneration related protein 2 like).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8171 Is expressed in several structures, including nervous system; neural plate; otic vesicle; presumptive diencephalon; and presumptive telencephalon. Orthologous to human CDR2L (cerebellar degeneration related protein 2 like).

Ensembl:

ensembl_id ENSDARG00000026834

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052241 False 2144 mRNA 0.55 6 59951010 59981476
TCONS_00052240 False 2358 mRNA 0.54 5 59951010 59981476
TCONS_00052242 True 1465 mRNA 0.60 6 59951512 59981162

Neighbor

gene id symbol gene type direction distance location
XLOC_026881 NA coding downstream 67524 59871526 ~ 59883486 (-)
XLOC_026880 nptx1l coding downstream 478588 59453467 ~ 59472422 (-)
XLOC_026879 CABZ01053748.1 coding downstream 653478 59287569 ~ 59297532 (-)
XLOC_026878 prpsap1 coding downstream 867852 59070401 ~ 59083158 (-)
XLOC_026877 CU570684.1 coding downstream 1119327 58828341 ~ 58831683 (-)
XLOC_026883 recql5 coding upstream 4644 59986120 ~ 60027308 (-)
XLOC_026884 NA coding upstream 54625 60036101 ~ 60055759 (-)
XLOC_026885 NA coding upstream 85906 60067382 ~ 60068951 (-)
XLOC_026886 NA coding upstream 145051 60126527 ~ 60127561 (-)
XLOC_026887 si:ch211-120g10.1 coding upstream 148372 60129848 ~ 60142530 (-)
XLOC_026874 NA non-coding downstream 1254906 58694690 ~ 58696104 (-)
XLOC_026871 FP016018.3 non-coding downstream 1277844 58654063 ~ 58673166 (-)
XLOC_026873 CU571382.2 non-coding downstream 1280068 58669650 ~ 58670942 (-)
XLOC_026872 CU571382.3 non-coding downstream 1289890 58659756 ~ 58661120 (-)
XLOC_026892 AL954150.1 non-coding upstream 470024 60451500 ~ 60451628 (-)
XLOC_026895 NA non-coding upstream 612659 60594135 ~ 60602432 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000351_00695336_00702048 CDR2L coding CI01000351 null 694938 ~ 702048 (-)