RNA id: TCONS_00052240


Basic Information

Item Value
RNA id TCONS_00052240
length 2358
RNA type mRNA
GC content 0.54
exon number 5
gene id XLOC_026882
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 59951010 ~ 59981476 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGAAAGCAACGGGATGTTGTGGGAGCTCGGATGAGGAGCGATATCTGCGCTTAGCACGGCGGTGGGAGGGGTTCAGTGTGACAGAGCCCAATGGCAGCAGAAGACTGACATTTCCTTCATTTCTCGCAGGAAATTTCTCTTTGGCATGACGGAGACACCGAATAACGGAGCGTGTCTTTGCGGTGAGTTTAGCGTGAGCGCGCGCGCTGTCATCATTTAACGGTCGCTTCAGCGCGGAGCCTGCTCCAGACGGACATCCACAAAACACAAAACCGTGAAAATAGGTGTTTAAAGTGTGTTTTAGGGAAGTGCCCGTGTAAGTGTACTGCACGAACGCCTTGTAAACTCGCATATAACGCAGTCTCACGTCATGTATGTTTGATATCGCTTTAGTAGATCGCCGCATCTCTGAGCTTCCGGGCGGCCGTTAAAAACGAAAAACGCACCGCGACAAACTGATGCTCCGAGCCGGCAGGATGGACGAGTTTGTGACGGAAGAGGACGAGCCGTGGTACGACCAGAGAGACCTGGAGCAAGATCTGCACCTGGCAGCCGAGCTGGGCAAAACCCTGCTGGAGCGCAATAAGGAGCTGGAGGACTCGCTGCAGCAGATGTACATCAACAATGAAGAGCAGGTGCAGGAAATCGAGTACTTGACCAAGCAGATGGAGATGTTGCGAGAGATGAACGAGCAGCACGCTAAAGTGTACGAGCAGCTGGATGTGACGGCCAGAGAGCTGGAGATAACCAACGAGAAACTGGTGCTGGAGAGCAAAGGTTCACAGCAGAAGATTGACAGACTGACCGGTACTATGGAGATGCTGCAGGGTCAGGTGGACACGCTCACGGCTCGCGTGGAGGAGCTGCGCACGCTGGAGGAGCTCAGGGTTCGCCGGGAGAAGAAGGAGCGCAGGAAGACTGTGCACTCCTTCCCCTGCCTCAAAGAGCTCTGCACCGCCCCCAGGTATGAGGATAGTTTCATGGTGTCCGACCCCGGTAGCGGAGACCTGGAGGAATGTCAGCCGGCGGACGAAGAGAACGAGCATCTGCGCGTGATGGTTTCCTCTCTGCGTGCAGCAGTGGCGGCTGAACGCGGGCGGCGGGAGGCTGCGGAGAGGGAGTGTGCCGCGGTGCTCCAGGAGTTTGAGCGTCTGGAACAGCGCCTCCTGGGGGCTGAGAGCTGTCAGCGGCGCGTGCACGAGCTGGAGGCAGAGCTTCAGGAGATGCAGCAGCTCCGCAAGTCTCGCGTATGTCTGCTGAGCGGAGAGGAAGGCTTGGAGCAGACGCTGCTTAACTGTGCACCAGAGACCGACACTCCAGACGAGGCGGTGATGGCGCAGAACGGGGACGCTAATGACGGAGCTGCACCTGTGCGCAAGAGCTGCAGCGACACCGCTCTGGATGCCATCTCTGCGGTTGATGCCTCAGGGAGACGCAAAGGCAGCTACGCGCTACATGCTAACGGCGTCCGCAAGAGAGGCATGTCCATCCTGCGGGAGGTGGACGAACAGTATCACGCACTTCTAGAGAAATACGAGGAGCTTCTAGGAAAGTGTCGTCGCCACGAGGAGAGTCTGCGGCACGCTGAAGTCCAAACATCTCGGCCTGTGTCCAGAGACCCGTCCATGAAGGAGTGCCGGGTCGCGGAGCCACAGCAGCCACCACCAACACCTCCGCAGACGCCCTCGACTCCTGAAGCTCTGGAGGGCATCAGCCGGCAGGTGGAGGCGGTGGACAAACGGCTGAGCCAGAACACGCCAGAGTACAAAGCCCTCTTCAAGGAGATCTTCTCCCGCTTGCAGAGGACCAAGAGCGATATAAACTCCACCAAAGGGAGGAAAGGTGGGAAATAGACCACTCCCCCACATAGACATCTGATACATGgcaaaatatatatgcaaatcaCGTCATGTGATTTGCATGTACGTCCATGTATCAGATCCTATATGGGTCTGCTCTTAACTTCTGTGCCACTGGTTTCTTTCCCTGGTTGTTCATGTAATGTCTTAACTTTTCTTTAGGAAACTGCGCCAGCGATATTTAGCGATGGCTGTTATTTAGTGCGACTCATCCCTGAACCTTTTGGTGCCACTGATATGAAGATAAATGGTGGTTTTCTATTAACAGGATGCTCGTCTTTTGCGTCTGATGTGCTTTTTTGCCAGGTTGGCCTTTTAGGGTAGACCATATTACTCTCTTGGTTTAACTGTAACCATATTCATCCTAATGTCGATCAGCACAGGAAGACATGATGCTTATCCTTGCTGATCGTTTCCTTTCTCACATGTATCACGTCATGGATAATCACAGCCTTGTGTAACCACTTTTGTTCAATATTAAATCACACTTTGCTTT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8171 Is expressed in several structures, including nervous system; neural plate; otic vesicle; presumptive diencephalon; and presumptive telencephalon. Orthologous to human CDR2L (cerebellar degeneration related protein 2 like).

Ensembl:

ensembl_id ENSDART00000035878

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053173 lncRNA downstream 67524 59871526 ~ 59883486 (-) True XLOC_026881
TCONS_00053170 lncRNA downstream 1254906 58694690 ~ 58696104 (-) False XLOC_026874
TCONS_00053169 lncRNA downstream 1255019 58694690 ~ 58695991 (-) False XLOC_026874
TCONS_00053174 lncRNA upstream 54625 60036101 ~ 60055759 (-) False XLOC_026884
TCONS_00053175 lncRNA upstream 60676 60042152 ~ 60055563 (-) True XLOC_026884
TCONS_00053176 lncRNA upstream 85906 60067382 ~ 60068786 (-) False XLOC_026885
TCONS_00053177 lncRNA upstream 85906 60067382 ~ 60068951 (-) True XLOC_026885
TCONS_00053178 lncRNA upstream 145051 60126527 ~ 60127561 (-) True XLOC_026886
TCONS_00052239 mRNA downstream 478588 59453467 ~ 59472422 (-) True XLOC_026880
TCONS_00052238 mRNA downstream 653478 59287569 ~ 59297532 (-) True XLOC_026879
TCONS_00052237 mRNA downstream 867852 59070401 ~ 59083158 (-) True XLOC_026878
TCONS_00052236 mRNA downstream 1119327 58828341 ~ 58831683 (-) True XLOC_026877
TCONS_00052235 mRNA downstream 1127248 58805790 ~ 58823762 (-) True XLOC_026876
TCONS_00052243 mRNA upstream 4644 59986120 ~ 60027308 (-) False XLOC_026883
TCONS_00052244 mRNA upstream 4874 59986350 ~ 60027255 (-) True XLOC_026883
TCONS_00052245 mRNA upstream 148372 60129848 ~ 60142530 (-) True XLOC_026887
TCONS_00052246 mRNA upstream 164833 60146309 ~ 60175470 (-) True XLOC_026888
TCONS_00052248 mRNA upstream 303639 60285115 ~ 60288533 (-) False XLOC_026889
TCONS_00052189 other downstream 3333969 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 3376045 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 4300593 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 4469853 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052148 other downstream 4871766 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052254 other upstream 470024 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

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