XLOC_026889 (si:ch211-214b16.3)


Basic Information

Item Value
gene id XLOC_026889
gene name si:ch211-214b16.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60285115 ~ 60308937 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052248
TTTTGTGATCTAAACAAGatcttatatttaaaataaaacacactaacaTGAGCTCTTACTGTTGCTGTAGATTATCTTACTGTTTGGTGTCAGAGGAAGGTTGTGCagctctggcttcagctctgagcTCAAACCcgtcacacctgagagagctggatctgagctacaatcacccAGGAGAAGCAGGACTCAAACTGCTCTCTGATCAGCTCAAACACCTCCACAAACTCAAtgtgGATCATGGAGGAGAATTCAGGACTGTATCAACACTACACAAAtacgCCTGTGAACTcacactggatccaaacacagcacacacacgcctcgctctgtctgaggagaacagaaagGCGACGCGTGTGAAGGAGAGTCAGTCTTATCCTcgtcatccagacagatttgataaGTTTCATCAGGTTATGAGTAAAGAGAGTCTgactggacgctgttactgggagactCAATGGAGCGGATATGCTGAAATATCAGTTTGTTATAAAGGAATCAAGAGGAAAGGACGGAGTGACTGTCGGTTTGGATGTAATGATCAGTCCTGGAGACTTGATTGCTCTGATCACTCATTCTCTGTCTGTCACAATAATGAACTCACACACATCTCAGCTCGTCCAGACTCCAGCAGGACAGTAGGAGTGTTTGTGGACGAGTCGAGCGGCTCTCTGTCCTTCTACAGTGTCTCTGATAaactcacacacttacacacattcaACACCACATTCACCGACACACTCCACGCTGGATTTAGACTTGGTTATAAATCTTCAGTGTCTCTGTGTCGCattaaataacacacacaaacacatttattttcttgtgtttTCTGTGATCTGTGTATTAAACACTGCTGCTTGTGACAAATTCACTTCCTGTTTCctgtttttacactgcatttcCTGTTTTAATTGTTAGAGAGAAATGTCTGAACTCTTAATGATTACTATTGGGAAAATACTTGAAATCAttttagtaataaatattttgaagtTGACACGTCAAAATCATACATGACTggaattatttgttattatcattattattagtagtaatattgtatttttttcacaacatattatatatatatattcagcagtacacacacacacacacacacacacacacgcacacacgcacacacacacatacacacacacacacacacacacacacaaatagaaaaATAAGAGGAAGTTTGACAATTCTCAGATTATTTAGATTATTAATATACGGCTGTCGACCAACATTATATCTGATAGTTGATGtgattattcagttttattattatttcatgttaaagacttttatgtttatgttcatgCACTCAACACCGTATTAAAGTCTGTTCAGAAAAC
>TCONS_00052247
TTTTGTGATCTAAACAAGatcttatatttaaaataaaacacactaacaTGAGCTCTTACTGTTGCTGTAGATTATCTTACTGTTTGGTGTCAGAGGAAGGTTGTGCagctctggcttcagctctgagcTCAAACCcgtcacacctgagagagctggatctgagctacaatcacccAGGAGAAGCAGGACTCAAACTGCTCTCTGATCAGCTCAAACACCTCCACAAACTCAAtgtgGATCATGGAGGAGAATTCAGGACTGTATCAACACTACACAAAtgtaagtctctctctctctctctctctctctctctctctctctctcactctcacacacacacacacacacacacacacacacacacacacttctgtagAGTTTACAGTTTAGTTCTTGTAAATGttgtaatgtgtgtgttcttgtgttcagacgCCTGTGAACTcacactggatccaaacacagcacacacacgcctcgctctgtctgaggagaacagaaagGCGACGCGTGTGAAGGAGAGTCAGTCTTATCCTcgtcatccagacagatttgataaGTTTCATCAGGTTATGAGTAAAGAGAGTCTgactggacgctgttactgggagactCAATGGAGCGGATATGCTGAAATATCAGTTTGTTATAAAGGAATCAAGAGGAAAGGACGGAGTGACTGTCGGTTTGGATGTAATGATCAGTCCTGGAGACTTGATTGCTCTGATCACTCATTCTCTGTCTGTCACAATAATGAACTCACACACATCTCAGCTCGTCCAGACTCCAGCAGGACAGTAGGAGTGTTTGTGGACGAGTCGAGCGGCTCTCTGTCCTTCTACAGTGTCTCTGATAaactcacacacttacacacattcaACACCACATTCACCGACACACTCCACGCTGGATTTAGACTTGGTTATAAATCTTCAGTGTCTCTGTGTCGCattaaataacacacacaaacacatttattttcttgtgtttTCTGTGATCTGTGTATTAAACACTGCTGCTTGTGACAAATTCACTTCCTGTTTCctgtttttacactgcatttcCTGTTTTAATTGTTAGAGAGAAATGTCTGAACTCTTAATGATTACTATTGGGAAAATACTTGAAATCAttttagtaataaatattttgaagtTGACACGTCAAAATCATACATGACTggaattatttgttattatcattattattagtagtaatattgtatttttttcacaacatattatatatatatattcagcagtacacacacacacacacacacacacacacgcacacacgcacacacacacatacacacacacacacacacacacacacaaatagaaaaATAAGAGGAAGTTTGACAATTCTCAGATTATTTAGATTATTAATATACGGCTGTCGACCAACATTATATCTGATAGTTGATGtgattattcagttttattattatttcatgttaaagacttttatgtttatgttcatgCACTCAACACCGTATTAAAGTCTGTTCAGAAAAC
>TCONS_00052249
ACAGGCTTAAAATCAAATCTCAAATGTGTcaggaggaaaataaatgaaatgagtgcaTTTGAGGAGAGAGAGCAGAAAGCCTCTGTTGAGACTCAGAGAGCAGCATCTCCATTATCTAGCTGTGTGTCTTTGAAGAGTAACCAGTCCATCGGCGTCCGTCCTGATCTCAGTGATGGACCTGTGAACTCTGAGTCTGTTAGAAATGGACACAGATCTCCATTATCTAGCTGTGTGTCTTTGAAGAGTAACCAGTCCATTGGTGTCCGTCCTGATCTCAGTGATGGAGCTGTGAACTCTGACTCCGTTAAATCCAGCAAGAAGAGAAAGAAAGCGGAATCTTTATTATCTAGCTGTGTGTCTTTGAAGAGTGACCAGTCCATTGGTGTCCGTCCTGATCTCAGTGATGGAGCTGTGAACTCTGACTCTGTTAAATCCAGCAAGAAGAGAAAGAAAGCGGAATCTTTATTATCTAGCTGTGTGTCTTTGAAGAGTGACCAGTCCATTGGTGTCCGTCCTGATCTCAGTGATGGACCTGTGAACTCTGAGTCTGTtaaatCCAGCAAGAAGAGAAAGAAAGCGGAATCTTTGTTATCTAGCTGTGTGTCTTTGAAGAGTAACAAGTCCATTGGTATCCGTCCTGATCTCAGTGATGGACCTGTGAACTCTGACTCTGTATCCTCCTCCTATCAAAAACACACCAGTCATTATAAAACAGAGGCATACATACAGATTGAGTCTCAACAACCAGTGAATGATGATCTTCAGAGAGTGAAAGAGCAGCACAAGTTCATCATGAAGAACAAGTACGAGAGCTTATTTGAGGGAGTGAAACTCCAGCAGAatcaaaccctcctgaacagcaTTTACACACAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggtgcTGCAGATGGAGAAGAGATACAAGACTCTCCAAGACACTCCAATcaactgcaatgacatctttaacccttcagctgaagcaggagatgaGGAGAAGAGCAGAGAGGAGAAAGAGCAGATCAAGACcgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatctttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttcaGCATCTGGACTCACAGATTTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACTGTCAGAAAGTTTCTGATGTGACTGAAGCTTCATCAGTGAGTGTGTTGATGTCAAACCTCatgaaaggagatctgcttccctccgctctcatctggatcaccaccAGACCAGCAGCGGCCAATCAGATCCCCTCAAAACACATCAGCCTCGTGACGGAGATTCAGGGCTTCAATgaccctcagaaggaggaatatttcaggaagagaatcagagATGAagatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcagccACTGTGCTTCAAACCATCCTGAAAGAAGATCTGAgagcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagacacacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagacGTGATTGTGAAACTTGCTGAACTGGCTTTCAatcagctgatgaagggcaatgtgatgttctacgaggaggacctgattgagagcgggaTAGACGTCGCTGACgcctcagtgtattctgggatctgcactgagatcttcagAGAGGAATCTGTGATTTATCAGAGGAAGGTTTACAGCTTTGTTCATCTGAGCTTTCAGGAGTGTTTTGCAGCACTGTATGTGTTTTACTGCTATTTACACAAGAAAACTGAGGTGATGAAGATGTTCCTGACAGGGAAACACAGAACTCAGAGTGAGAGTGTTTCTCTGGATGTGTTTCTGAAGGGAGCAATGAATAAAGCCTTAAAGAGTAAAACTGGACACCTGGATCTTTTTCTGCGATTTCTTCATGGTATCttactggagtccaatcagagactcttacAGGATctgctgaaacacacagagaacgacccagagatcatcaagacaataatccaaaatCTCAAACGAGGTCAAAAAAACATCAGTCCTGAAAGATGGATGAATCTCTCACACTGCTTGATTGAAATGAAGGATAATTCTTTTGTTGAAAAAGTGCAATTGTTGTTAAATTCTGAAAAACAAAGTAAATGTCTTTCTCTTGCACAATGCTCAACTTTGGCAAACCTGATCCTGATGTCAGAAGAGGTATTGGATGTGCTAGACATTAAAAAGTACAACATGAAATCAAGCGAAGGCCGATTGAGACTACTGCCTGCTGTGAGgaactgcagaagagctctATTGTCAGAATGTAATCTTGCAAATCAGCACTTTGAAGTTGTGTCTTCTGCTCTACAATCATCAAACTGCcccctgagagagctggacctgagtcaCAATGagctgcaggattcaggagtgaagctgatCTGTGctggactgaagagtccaaactgtcAACTCAACATACTgagATTGTCAGGCTGTAATCTCACTGATCAGTGCTGTGAAACTGTGGCTTCATCTCTACAATTATCCAACTGCCctctgagagagctggacctgagtcaCAATGATCTTCAGGGTTCAAGAGTGAAGCTGATCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAACACACTGAGACTGGCAAAATGCAACCTCACTGATGAGTGCTGTGAAACTGTGGCTTCATCTCTACAATCATtaaactgtgtcctgagagagctggacctaaACAGCAATTctctgcaggattcaggagtgaagctgatTTTTACCGCAATAAAGAGTGAGAACTGCCAGCTCAACACACTGAGAATGTCAGACTGTAATCTCACTGATCAGTGCTGTGAAACTGTGGCTTCAGCTCTACAATCATCAAACTGCCCCCTGAgtgagctggacctgagtaataatgagctgcaggattcaggagtgaagctgatCTGTGCTGGATTAAAGAGCCCAAACTGTCAACTCAATATACTGAGATTATCTTACTGTTTGGTGTCAGAGGAAGGTTGTGCagctctggcttcagctctgagcTCAAACCcgtcacacctgagagagctggatctgagctacaatcacccAGGAGAAGCAGGACTCAAACTGCTCTCTGATCAGCTCAAACACCTCCACAAACTCAAtgtgGATCATGGAGGAGAATTCAGGACTGTATCAACACTACACAAAtacgCCTGTGAACTcacactggatccaaacacagcacacacacgcctcgctctgtctgaggagaacagaaagGCGACGCGTGTGAAGGAGAGTCAGTCTTATCCTcgtcatccagacagatttgataaGTTTCATCAGGTTATGAGTAAAGAGAGTCTgactggacgctgttactgggagactCAATGGAGCGGATATGCTGAAATATCAGTTTGTTATAAAGGAATCAAGAGGAAAGGACGGAGTGACTGTCGGTTTGGATGTAATGATCAGTCCTGGAGACTTGATTGCTCTGATCACTCATTCTCTGTCTGTCACAATAATGAACTCACACACATCTCAGCTCGTCCAGACTCCAGCAGGACAGTAGGAGTGTTTGTGGACGAGTCGAGCGGCTCTCTGTCCTTCTACAGTGTCTCTGATAaactcacacacttacacacattcaACACCACATTCACCGACACACTCCACGCTGGATTTAGACTTGGTTATAAATCTTCAGTGTCTCTGTGTCGCattaaataacacacaca
>TCONS_00052250
CCTGTGTCTTTAAACAGATCAAATTGTGTCTTATGTGTCCTACAGATCCTCCTCCTATCAAAAACACACCAGTCATTATAAAACAGAGGCATACATACAGATTGAGTCTCAACAACCAGTGAATGATGATCTTCAGAGAGTGAAAGAGCAGCACAAGTTCATCATGAAGAACAAGTACGAGAGCTTATTTGAGGGAGTGAAACTCCAGCAGAatcaaaccctcctgaacagcaTTTACACACAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggtgcTGCAGATGGAGAAGAGATACAAGACTCTCCAAGACACTCCAATcaactgcaatgacatctttaacccttcagctgaagcaggagatgaGGAGAAGAGCAGAGAGGAGAAAGAGCAGATCAAGACcgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatctttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttcaGCATCTGGACTCACAGATTTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACTGTCAGAAAGTTTCTGATGTGACTGAAGCTTCATCAGTGAGTGTGTTGATGTCAAACCTCatgaaaggagatctgcttccctccgctctcatctggatcaccaccAGACCAGCAGCGGCCAATCAGATCCCCTCAAAACACATCAGCCTCGTGACGGAGATTCAGGGCTTCAATgaccctcagaaggaggaatatttcaggaagagaatcagagATGAagatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcagccACTGTGCTTCAAACCATCCTGAAAGAAGATCTGAgagcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagacacacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagacGTGATTGTGAAACTTGCTGAACTGGCTTTCAatcagctgatgaagggcaatgtgatgttctacgaggaggacctgattgagagcgggaTAGACGTCGCTGACgcctcagtgtattctgggatctgcactgagatcttcagAGAGGAATCTGTGATTTATCAGAGGAAGGTTTACAGCTTTGTTCATCTGAGCTTTCAGGAGTGTTTTGCAGCACTGTATGTGTTTTACTGCTATTTACACAAGAAAACTGAGGTGATGAAGATGTTCCTGACAGGGAAACACAGAACTCAGAGTGAGAGTGTTTCTCTGGATGTGTTTCTGAAGGGAGCAATGAATAAAGCCTTAAAGAGTAAAACTGGACACCTGGATCTTTTTCTGCGATTTCTTCATGGTATCttactggagtccaatcagagactcttacAGGATctgctgaaacacacagagaacgacccagagatcatcaagacaataatccaaaatCTCAAACGAGGTCAAAAAAACATCAGTCCTGAAAGATGGATGAATCTCTCACACTGCTTGATTGAAATGAAGGATAATTCTTTTGTTGAAAAAGTGCAATTGTTGTTAAATTCTGAAAAACAAAGTAAATGTCTTTCTCTTGCACAATGCTCAACTTTGGCAAACCTGATCCTGATGTCAGAAGAGGTATTGGATGTGCTAGACATTAAAAAGTACAACATGAAATCAAGCGAAGGCCGATTGAGACTACTGCCTGCTGTGAGgaactgcagaagagctctATTGTCAGAATGTAATCTTGCAAATCAGCACTTTGAAGTTGTGTCTTCTGCTCTACAATCATCAAACTGCcccctgagagagctggacctgagtcaCAATGagctgcaggattcaggagtgaagctgatCTGTGctggactgaagagtccaaactgtcAACTCAACATACTgagATTGTCAGGCTGTAATCTCACTGATCAGTGCTGTGAAACTGTGGCTTCATCTCTACAATTATCCAACTGCCctctgagagagctggacctgagtcaCAATGATCTTCAGGGTTCAAGAGTGAAGCTGATCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAACACACTGAGGTTTGAGAATTTTCTTCTACCTTTATTTGCCTTTAAtacaattaacatttttattccagctgaaaaaGCTCTGA

Function

symbol description
si:ch211-214b16.3 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-50 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000089079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052248 False 1367 mRNA 0.39 3 60285115 60288533
TCONS_00052247 False 1517 mRNA 0.39 2 60285115 60288533
TCONS_00052249 False 4001 mRNA 0.45 13 60285668 60308937
TCONS_00052250 True 2354 mRNA 0.44 3 60292588 60301801

Neighbor

gene id symbol gene type direction distance location
XLOC_026888 si:ch73-364h19.1 coding downstream 109645 60146309 ~ 60175470 (-)
XLOC_026887 si:ch211-120g10.1 coding downstream 142585 60129848 ~ 60142530 (-)
XLOC_026886 NA coding downstream 157554 60126527 ~ 60127561 (-)
XLOC_026885 NA coding downstream 216164 60067382 ~ 60068951 (-)
XLOC_026884 NA coding downstream 229356 60036101 ~ 60055759 (-)
XLOC_026890 si:ch211-214b16.2 coding upstream 5337 60314274 ~ 60316118 (-)
XLOC_026891 si:ch211-214b16.4 coding upstream 30051 60338988 ~ 60401826 (-)
XLOC_026892 AL954150.1 coding upstream 142563 60451500 ~ 60451628 (-)
XLOC_026893 si:ch73-366l1.5 coding upstream 217045 60525982 ~ 60571218 (-)
XLOC_026894 jmjd6 coding upstream 266176 60575113 ~ 60589292 (-)
XLOC_026881 NA non-coding downstream 401629 59871526 ~ 59883486 (-)
XLOC_026874 NA non-coding downstream 1589011 58694690 ~ 58696104 (-)
XLOC_026895 NA non-coding upstream 285198 60594135 ~ 60602432 (-)
XLOC_026899 NA non-coding upstream 548085 60857022 ~ 60861145 (-)
XLOC_026901 NA non-coding upstream 640631 60949568 ~ 60956010 (-)
XLOC_026917 NA non-coding upstream 1490186 61799123 ~ 61844869 (-)

Expression


Co-expression Network