RNA id: TCONS_00052250


Basic Information

Item Value
RNA id TCONS_00052250
length 2354
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_026889
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60285115 ~ 60308937 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGTGTCTTTAAACAGATCAAATTGTGTCTTATGTGTCCTACAGATCCTCCTCCTATCAAAAACACACCAGTCATTATAAAACAGAGGCATACATACAGATTGAGTCTCAACAACCAGTGAATGATGATCTTCAGAGAGTGAAAGAGCAGCACAAGTTCATCATGAAGAACAAGTACGAGAGCTTATTTGAGGGAGTGAAACTCCAGCAGAatcaaaccctcctgaacagcaTTTACACACAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggtgcTGCAGATGGAGAAGAGATACAAGACTCTCCAAGACACTCCAATcaactgcaatgacatctttaacccttcagctgaagcaggagatgaGGAGAAGAGCAGAGAGGAGAAAGAGCAGATCAAGACcgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatctttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttcaGCATCTGGACTCACAGATTTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACTGTCAGAAAGTTTCTGATGTGACTGAAGCTTCATCAGTGAGTGTGTTGATGTCAAACCTCatgaaaggagatctgcttccctccgctctcatctggatcaccaccAGACCAGCAGCGGCCAATCAGATCCCCTCAAAACACATCAGCCTCGTGACGGAGATTCAGGGCTTCAATgaccctcagaaggaggaatatttcaggaagagaatcagagATGAagatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcagccACTGTGCTTCAAACCATCCTGAAAGAAGATCTGAgagcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagacacacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagacGTGATTGTGAAACTTGCTGAACTGGCTTTCAatcagctgatgaagggcaatgtgatgttctacgaggaggacctgattgagagcgggaTAGACGTCGCTGACgcctcagtgtattctgggatctgcactgagatcttcagAGAGGAATCTGTGATTTATCAGAGGAAGGTTTACAGCTTTGTTCATCTGAGCTTTCAGGAGTGTTTTGCAGCACTGTATGTGTTTTACTGCTATTTACACAAGAAAACTGAGGTGATGAAGATGTTCCTGACAGGGAAACACAGAACTCAGAGTGAGAGTGTTTCTCTGGATGTGTTTCTGAAGGGAGCAATGAATAAAGCCTTAAAGAGTAAAACTGGACACCTGGATCTTTTTCTGCGATTTCTTCATGGTATCttactggagtccaatcagagactcttacAGGATctgctgaaacacacagagaacgacccagagatcatcaagacaataatccaaaatCTCAAACGAGGTCAAAAAAACATCAGTCCTGAAAGATGGATGAATCTCTCACACTGCTTGATTGAAATGAAGGATAATTCTTTTGTTGAAAAAGTGCAATTGTTGTTAAATTCTGAAAAACAAAGTAAATGTCTTTCTCTTGCACAATGCTCAACTTTGGCAAACCTGATCCTGATGTCAGAAGAGGTATTGGATGTGCTAGACATTAAAAAGTACAACATGAAATCAAGCGAAGGCCGATTGAGACTACTGCCTGCTGTGAGgaactgcagaagagctctATTGTCAGAATGTAATCTTGCAAATCAGCACTTTGAAGTTGTGTCTTCTGCTCTACAATCATCAAACTGCcccctgagagagctggacctgagtcaCAATGagctgcaggattcaggagtgaagctgatCTGTGctggactgaagagtccaaactgtcAACTCAACATACTgagATTGTCAGGCTGTAATCTCACTGATCAGTGCTGTGAAACTGTGGCTTCATCTCTACAATTATCCAACTGCCctctgagagagctggacctgagtcaCAATGATCTTCAGGGTTCAAGAGTGAAGCTGATCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAACACACTGAGGTTTGAGAATTTTCTTCTACCTTTATTTGCCTTTAAtacaattaacatttttattccagctgaaaaaGCTCTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-50 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000190524

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053178 lncRNA downstream 165027 60126527 ~ 60127561 (-) True XLOC_026886
TCONS_00053177 lncRNA downstream 223637 60067382 ~ 60068951 (-) True XLOC_026885
TCONS_00053176 lncRNA downstream 223802 60067382 ~ 60068786 (-) False XLOC_026885
TCONS_00053174 lncRNA downstream 236829 60036101 ~ 60055759 (-) False XLOC_026884
TCONS_00052509 lncRNA upstream 292334 60594135 ~ 60602432 (-) False XLOC_026895
TCONS_00053179 lncRNA upstream 555221 60857022 ~ 60861145 (-) True XLOC_026899
TCONS_00053180 lncRNA upstream 585084 60886885 ~ 60888183 (-) True XLOC_026900
TCONS_00053181 lncRNA upstream 647767 60949568 ~ 60956010 (-) False XLOC_026901
TCONS_00053182 lncRNA upstream 652593 60954394 ~ 60955985 (-) True XLOC_026901
TCONS_00052248 mRNA downstream 4055 60285115 ~ 60288533 (-) False XLOC_026889
TCONS_00052247 mRNA downstream 4055 60285115 ~ 60288533 (-) False XLOC_026889
TCONS_00052246 mRNA downstream 117118 60146309 ~ 60175470 (-) True XLOC_026888
TCONS_00052245 mRNA downstream 150058 60129848 ~ 60142530 (-) True XLOC_026887
TCONS_00052243 mRNA downstream 265280 59986120 ~ 60027308 (-) False XLOC_026883
TCONS_00052251 mRNA upstream 12473 60314274 ~ 60316118 (-) True XLOC_026890
TCONS_00052252 mRNA upstream 37187 60338988 ~ 60401826 (-) False XLOC_026891
TCONS_00052253 mRNA upstream 37261 60339062 ~ 60401826 (-) True XLOC_026891
TCONS_00052255 mRNA upstream 224181 60525982 ~ 60571218 (-) True XLOC_026893
TCONS_00052256 mRNA upstream 273312 60575113 ~ 60589292 (-) True XLOC_026894
TCONS_00052189 other downstream 3675547 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 3717623 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 4642171 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 4811431 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052148 other downstream 5213344 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052254 other upstream 149699 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

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