RNA id: TCONS_00053182


Basic Information

Item Value
RNA id TCONS_00053182
length 856
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_026901
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60949568 ~ 60956010 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtgatgtttgcgTCAGTAGCGCCGCCGCTCGGCCGCGCGCGTCACTGCGCGATGAAAACAGTCAGCGATGCGTCGCGCCACTCCgccagcgagtgtgtgtgtgtgtgtgagagagagtgtgtgtatatgtgtgtgtttcctcGCAAACTTCCCATCCCGGAGCACACGACAGCAGGACAAAACCTTCATCTGACCACAACGCAACGCAATGCCGCCTTCCCGAATCACAATCATCGCTATTTAACGCGCGCGTGCGGAGAAGGACAGGTGCAAGAGAGGATTCATTAATATAATTACCAACATCATTACTGAGAGAATCACAGCTTCATTATAAAGTTTAACATAGAAACCGCGACACTTGGCGTGCTTTTTTTTGCTTCTCCGTGCGTAAAAACGCATGGGCATCGGCGGATTCCAGGAGTCATTTCTgcacattaataacaacaataataaaggcGCGAACACAGGAGCCTTTCTGCAGGACTGCGTTGATCTTTTCTCGTCTTTTCATGTGACAACTCGTGATTACACGCATCACCCGACGGCTGAATGCTTTTGGATGATCACTGGCCACCGATTTAACGTGGAAATCACCGGGAGAGGACAATGTTGATGAAGGAATACCGGATATGCATGCCGCTGACCGTGGAGGAGTGTAAAAGCTCATGTGTAAATCCTCTTGGTGGTGCTGTGGAACTTTCTATTCATCCCCTCCAGTGTTtgttcattaaagggatagttctatGGGGCTAGATCGGTCTCAGaagcaatacaaaaatataaaatacaaaaataaaattcaaaaatgcgcatcacaattcacatttacaaaatccagtttgttaattcaaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053180 lncRNA downstream 66211 60886885 ~ 60888183 (-) True XLOC_026900
TCONS_00053179 lncRNA downstream 93249 60857022 ~ 60861145 (-) True XLOC_026899
TCONS_00052509 lncRNA downstream 351962 60594135 ~ 60602432 (-) False XLOC_026895
TCONS_00053178 lncRNA downstream 826833 60126527 ~ 60127561 (-) True XLOC_026886
TCONS_00053177 lncRNA downstream 885443 60067382 ~ 60068951 (-) True XLOC_026885
TCONS_00053183 lncRNA upstream 843138 61799123 ~ 61844869 (-) True XLOC_026917
TCONS_00053184 lncRNA upstream 1243203 62199188 ~ 62201786 (-) False XLOC_026921
TCONS_00053185 lncRNA upstream 1244087 62200072 ~ 62201944 (-) True XLOC_026921
TCONS_00053186 lncRNA upstream 1276083 62232068 ~ 62241733 (-) True XLOC_026922
TCONS_00053187 lncRNA upstream 1297008 62252993 ~ 62333722 (-) True XLOC_026923
TCONS_00052261 mRNA downstream 67410 60862441 ~ 60886984 (-) False XLOC_026900
TCONS_00052260 mRNA downstream 98237 60851049 ~ 60856157 (-) True XLOC_026898
TCONS_00052259 mRNA downstream 126992 60812851 ~ 60827402 (-) True XLOC_026897
TCONS_00052258 mRNA downstream 243267 60684909 ~ 60711127 (-) True XLOC_026896
TCONS_00052257 mRNA downstream 351962 60594138 ~ 60602432 (-) True XLOC_026895
TCONS_00052262 mRNA upstream 87789 61043774 ~ 61065055 (-) True XLOC_026902
TCONS_00052263 mRNA upstream 122072 61078057 ~ 61099004 (-) True XLOC_026903
TCONS_00052264 mRNA upstream 152371 61108356 ~ 61116258 (-) False XLOC_026904
TCONS_00052265 mRNA upstream 152750 61108735 ~ 61116295 (-) True XLOC_026904
TCONS_00052266 mRNA upstream 198234 61154219 ~ 61162750 (-) True XLOC_026905
TCONS_00052254 other downstream 502766 60451500 ~ 60451628 (-) True XLOC_026892
TCONS_00052189 other downstream 4337353 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 4379429 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 5303977 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 5473237 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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