RNA id: TCONS_00053187


Basic Information

Item Value
RNA id TCONS_00053187
length 1246
lncRNA type read_through
GC content 0.43
exon number 2
gene id XLOC_026923
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62252993 ~ 62333722 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACAACACAAATGAATAGGCCTTCCAAACTTAAGGCCTTGATATACTGAAGAACTGAAGAAGTGATGATGAACAAAttcgtgcaaaacgctcaatttgcgTATCGGGCGTATcgtgctgcaggatgtctattcacgtctttgcattgacttaacatgtaaatcacccgcgcttgacgcttcttccgcatctggtgtgaacgcagcataatacACACCGATCATGtctatggtttctctccagtgtgaatcctctcatgtcttTTCAGGTTTCGTAAGTCTCTGAATTTCCtttcacagtgtgaacacttgtacggtttctctccagtgtgaatagTTTCATGTTTTTTCAGATGTGCTAACTGAATAAatctcttgtcacagtgtgaacacgtgtacggtttctctccagtgtgaatcatctggTGCCGCTTCAATCCTCCAGCTGTGAtgaaagtcttctcacactcaaagcattTATACTCTCGTATACCAgcgtggatcttcatgtgtttattaagatgTGATGATcgcctgaaactcttcccacactgagtgcatgtgaatggtttctctccagtgtggctcatcatgtgttcattaaggctTGATGATTGGATGTAGCTCTTCCCACACaaagtgcatgtgtatggtttctctccagtgtggatctttaagtgttgattaaggtttgatgattggatgtaactctttccacactgagtgcatgtgaatggcttctctccagtgtggctcctcATGTGTTGATTGAGGTTTGATGATTGGATgtaactcttcccacacagagtgcatgtgaatggtttctctccagtgtggctcctcATGTGTTGATTGAGGTTTGATGATTGGATgtaactcttcccacacagagtgcatgtgaatggtttctctccagtgtggatcctcatgtgtagttTAAGACTGCATTTTCTtcccaaactctttccacactgagtgcatgtgtatggtttctcgccagtgtggatcctcatgtgttttttaaggtTTGATGAGTGGCTAAAACTCTTCTCGCAccgagtgcatgtgtatggtttctttccagtgtggatcctcatgtgaaccTTAAGATTGCTTTGTCTTgccaaactcttcccacactgagtgcaggtgaaatgattcttgtctccacttttcaaaatatcatcagtctgtaaatgatttTCCTCAATtctgacatgatgttcctcctctttcatctcctcatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053186 lncRNA downstream 11260 62232068 ~ 62241733 (-) True XLOC_026922
TCONS_00053185 lncRNA downstream 51049 62200072 ~ 62201944 (-) True XLOC_026921
TCONS_00053184 lncRNA downstream 51207 62199188 ~ 62201786 (-) False XLOC_026921
TCONS_00053183 lncRNA downstream 408124 61799123 ~ 61844869 (-) True XLOC_026917
TCONS_00053181 lncRNA downstream 1296983 60949568 ~ 60956010 (-) False XLOC_026901
TCONS_00052296 lncRNA upstream 52827 62386549 ~ 62389756 (-) True XLOC_026927
TCONS_00053191 lncRNA upstream 234260 62567982 ~ 62592551 (-) False XLOC_026931
TCONS_00053192 lncRNA upstream 249580 62583302 ~ 62592530 (-) False XLOC_026931
TCONS_00053193 lncRNA upstream 253659 62587381 ~ 62592509 (-) True XLOC_026931
TCONS_00052291 mRNA downstream 58481 62173396 ~ 62194512 (-) True XLOC_026920
TCONS_00052290 mRNA downstream 127292 62091298 ~ 62125701 (-) True XLOC_026919
TCONS_00052289 mRNA downstream 165647 62064805 ~ 62087346 (-) True XLOC_026918
TCONS_00052287 mRNA downstream 660225 61566601 ~ 61592768 (-) False XLOC_026916
TCONS_00052292 mRNA upstream 33585 62367307 ~ 62380146 (-) True XLOC_026926
TCONS_00052293 mRNA upstream 48939 62382661 ~ 62393453 (-) False XLOC_026927
TCONS_00052294 mRNA upstream 48939 62382661 ~ 62393457 (-) False XLOC_026927
TCONS_00052295 mRNA upstream 48942 62382664 ~ 62393449 (-) False XLOC_026927
TCONS_00052297 mRNA upstream 63996 62397718 ~ 62403550 (-) True XLOC_026928
TCONS_00052254 other downstream 1801365 60451500 ~ 60451628 (-) True XLOC_026892
TCONS_00052189 other downstream 5635952 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 5678028 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 6602576 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 6771836 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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