RNA id: TCONS_00052293


Basic Information

Item Value
RNA id TCONS_00052293
length 3270
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_026927
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62382661 ~ 62393457 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCATCGCTTCAGATCTGCGTCACGGCTTCAGCGGGTGAGTGCTCCGTTATCTGCCACAATAATCATTTCCTAAAGTCAGAAGGTCAAAGTTAGAGGCAGTTTCTGCTGTTGAATGTGCTGCTCATCTTTACTGGAAGCTGAATATCCATGTAGGACACCCACAGCTGAATCCAGCACGCGCTTATATATTAACTCCGCTTGTTTCCTCTCACGCAGAGCGCTTCCTCCGTCATCATGGCTTGTCTCGGAATATATCTTTCCCTCGCAGTTTTGTTTGGCTTCGTGACCGCCGGATTACACAAAAGATCAGCCCCTGTGTTCCTGGAGAAGTGGGACGCGCTCAACGTGATCTCCCGTCAGAAGAGGAGCAACACTGGAGATGAGGAGACCAAACTCCCCGCTAACCTGGAGAGGGAGTGCCTAGAGGAAGTGTGTGACTATGAGGAGGCCAGAGAGGTGTTCCAGGACAACTACAGGacaGACATCTTCTGGTCGGTCTACATCGATGGTGACCAGTGTGCTGACCAGCCATGCAAAAATGGAGCCATGTGTTCAGATAGTGTGGGGGGGTACGACTGCATCTGTAAATCCGGCTTCACGGGAACACACTGTGAGACAGATCAGACGGTGTGTTTAATAGATAAGAGCAAGGGCTGCAGTCAGTTCTGTAAGCCGGGCTATCATTCATACGAGTGCTCCTGCGCTTACGGCTGGAAACTGCAGCAGAAGGAGAAGTGTGTGCCCGCAGtgacgTTTCCCTGTGGTAAAGTGGGCAGCGTGAGTCAGTGGGAGCGACGGCAGTCAGAAAACATCAAGTCGGAATATGAAGGATTCCCCTGCGGCCCGGAGGAGTGTCCCTGGCAGgcgaTGCTCCTGCGGGGATCCTCCGGCTTCTGCAGCGGCGTCATCCTGAAGGAGAATCTGGTTCTGACCACTGCGCAGTGTGCCAGAAAACACCCCGACTTCCAGGTGGCAGTGGGTAAGCGTATGACGATGTTCGAGTCGTCAGGTCAGACTCTGGCGGTCCGGCAGGTGCACCTCCACCCTCTGCACAGCACAGGTACAGCTGAGAATGACCTGGCGCTGCTGGAGCTCCGGGACAGGATCATCTTCAAGAAGAGCGTGGCGGCGGCCTGCCTTCCAGAGAGAGACTTTGCAGACCGCGTGCTGACGGCGGGACAGTACATGGGCGTGGTCACCGGCTGGAAGGACACGCCCACTGAGGACGGCATTGAAGGACACCTGCTGCTGAACCACCTGTCCTATCAAACACTGCAGGACTGCTCACGGCAACACTCCGCTCAGGTGTCCAGTAATAAGCTGATGTGCAGTCTGCCGCGGGCTAAAGCAGACTGTGTGTTTGGGCAGGGCAGTCCAGTGCTGACGCTGCACCGGGAGGTCTTCTTCCTGACGGGGATGGTGAGCCGGCCGGCGGGAGCCGACTGCAGGAGCGGATACATCTTACAGAAAGTGTCTCGCGCTCTGCCGTGGTTAAACTCTATCATGAGCCCGTAATTAAAGCAGGGACGTGTTAATATGGTAAACTACCCACCCTAAAGCTAACACTGCTCTTACACAGAGGCTGTGTCCTgttctagtccagatatctacaAACTCTCTCTTGACCTGTGCTTGTAGTCTGATTAGCACAtgttatgcatgattcactccaCTACACATTCAGTTATTTTCCCTCAgcttcaccacagcggaatgaaccgacaacttaatccagcttatgttttacacagtggatgcccttctagccgcaacccaatactgggaaacactcattcacacacacacacacacacacacacacacacacacaccagtgtagttgatcagttcccctatagcgcatgtgtttggactgaaaccggagcacccggaggaaacccacaacaacacagggagaacatgcaaactccacacagaaacaccaactgacccagccgagactcaaaccagatggtgctactcactgcgccaccctgACGCCCCCTTTCAGAATCATCCTAATCAATATGAATGCATTCGGTGACTCTGTAGGGAGCCATTCTCACTATTCACTAGTAGCTTATTAGTGTGCGtgttattgagatattggctgcttattagtacttataaagcacatgatcatattctacatccctaatccaacacctaaactaccttaataactCTATAAGCAGGTAAGTTGGAGTTTACTGAAGCAACATGGTCTGCTGAGAGCGAGAACTGAACCTTACTTACCAAGTATAACTAATGATATCGtaatatatatatcacaatatatagaGCTGAAAATGACTATCCCAATGCCAGATATTTCCCAATAGGAGTGTGTAATAATCTTATTTACGCTTCCTCCACTGTCAGGTGATTGAGCTTGTGTTGTCTGATGTCTGAACACAACACTATACTCTAGTCTAGTGTCGAGAGTAAGAGTGTGTGGATATCTGGACGACAGAGCTGTGTCTGCAGTGTCATACATCTCTTATTTGTACCGTTTACACTGTCCTTGTGTCCACTTACACAGAGAGCAGGCTGTTCTGCTGTAGTTCAGGGACTAAACGCATGAGCCGAGGCTGAAGAGCACGACGGCTGCTCCAGATGTGCATGTGCAGCGATCAGCCCACCCTTCACTGCTGTGGGGGTAACAGCATCATATATCAGCATTAAGCCTAAAAACACTGTTGAAATGCAGAGATACCGTCATGCTAACTGTACATTCATTAACCGTTATCATTGAGTTTGCTTCTGTTCAATGTGACTGCAGCATTACTCTACTCCTGACACTGTATATTGGTTCAGTAATGACTATACTAGTGAAGCAGTGATTTAACAACAGAAACCCGGCGGTTATTGGAGTAGATGTAAGTCGGAGTCGTGTGTAGATGTTGCAGACGCTCTCCTGCTCGGCTGTTGTGCAGTGATGTGTTGTTATATCTCCTTAAAGGCTCAGTTCACCCACAGATGAAGACGTGCTCTGCTTACTCTCCCTCTAGTGGTGTTAAACCGTCATGAGtgtctttctcctgttgaacactgaagaagatattttgaagtatgttgaaaaccggtaaccattgacttccataggaaaaacacacacatgttgaagggggcggggcatgtcggACACTAGAGTGGATTTGATTGGTCAGGAGTGTTGATGAGAGGCTCTAGAGAGTGTCAGGAATGTTGATCTGTGCATTGTGTTTTTGAATAATTGTggttttaataaaagtattaatgcTACACA

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-403 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Predicted to act upstream of or within blood coagulation and proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in Behcet's disease and brain ischemia. Orthologous to human PROZ (protein Z, vitamin K dependent plasma glycoprotein).

Ensembl:

ensembl_id ENSDART00000140782

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053187 lncRNA downstream 48939 62252993 ~ 62333722 (-) True XLOC_026923
TCONS_00053189 lncRNA downstream 53459 62259482 ~ 62329202 (-) True XLOC_026924
TCONS_00053190 lncRNA downstream 72128 62291855 ~ 62310533 (-) True XLOC_026925
TCONS_00053188 lncRNA downstream 102309 62259482 ~ 62280352 (-) False XLOC_026924
TCONS_00053186 lncRNA downstream 140928 62232068 ~ 62241733 (-) True XLOC_026922
TCONS_00053191 lncRNA upstream 174529 62567982 ~ 62592551 (-) False XLOC_026931
TCONS_00053192 lncRNA upstream 189849 62583302 ~ 62592530 (-) False XLOC_026931
TCONS_00053193 lncRNA upstream 193928 62587381 ~ 62592509 (-) True XLOC_026931
TCONS_00052292 mRNA downstream 2515 62367307 ~ 62380146 (-) True XLOC_026926
TCONS_00052291 mRNA downstream 188149 62173396 ~ 62194512 (-) True XLOC_026920
TCONS_00052290 mRNA downstream 256960 62091298 ~ 62125701 (-) True XLOC_026919
TCONS_00052289 mRNA downstream 295315 62064805 ~ 62087346 (-) True XLOC_026918
TCONS_00052287 mRNA downstream 789893 61566601 ~ 61592768 (-) False XLOC_026916
TCONS_00052297 mRNA upstream 4265 62397718 ~ 62403550 (-) True XLOC_026928
TCONS_00052298 mRNA upstream 23103 62416556 ~ 62417677 (-) True XLOC_026929
TCONS_00052299 mRNA upstream 127588 62521041 ~ 62527696 (-) False XLOC_026930
TCONS_00052300 mRNA upstream 131720 62525173 ~ 62527675 (-) True XLOC_026930
TCONS_00052254 other downstream 1931033 60451500 ~ 60451628 (-) True XLOC_026892
TCONS_00052189 other downstream 5765620 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 5807696 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 6732244 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 6901504 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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