RNA id: TCONS_00052292


Basic Information

Item Value
RNA id TCONS_00052292
length 2087
RNA type mRNA
GC content 0.57
exon number 4
gene id XLOC_026926
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62367307 ~ 62380146 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCTGAGCTCGCGCGTGTAAAGCGAGAAGAACAGCAGCAGCGGCAGCGTTATTACAGCATTATTACTGCAACATCTACACTAAACTGCTGCTCAACACACACCGAGGACGATacatctgcagtgtgtgtgtgtgtgtgtgtgtgtgtgcaggaatgAGGACGCCTGATGCTGTGTTTGTGCTGAGGGAATCCGCGGTTCTCCACGGCGCGTTCATTTGTTCCTGAATGGCGTCTCGGTTATTCACAGCGCGAACACACCGCTGAACTGAAGCCCTGACGGGGGATAAAGGAGGACTCTACACCGCAGAAGGACACCactgaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgagtgtgagtgtgtgtctccGCCGTGTTTTCAGCTGCAGGAGCAGAAATGTGACATTTTCCACACGCGCCTTTATCCATCGACCACAGCGGATGCTTTCATCGataaagATGTGCTCTGTCCATGTGTTGGTCCTTCTGTTGGCGGGTCTGGATGTCTGCTGCAGTGAGCAGGAGCGTCCCGCGGTGCCGCTGGGCTGTGCTCTGGGCCCGCCGCCGCCCTACACGCTGCTGTGTGACCTGGATGCGGTGTGGGGCGTAGCGGTGGAGGTGCTAGCGGCCGCTGGGGTGCTGTCTGCTCTGCTACTGCTGATGGTGTTGCTCTGCCGGCTCCACTCGGTGAGCGAGGCTCCGAAGCGCAGCGGCATCGGCCTGATAATGCTAATGCTAACCGGCGTCATCGGCCTGTTCGGACTGAGCTTCGCGTATCTGATCGAGTTCAGCGAGAGCATCTGCATCATCCGCCGCGCCCTCTGGGGGCTGCTCTTCTCTCTGTGCTTCGCCTGCATGCTAGCGCAGAGTCTCCGGCTGCGCAGGCTAGCTAACGAGTCTCGTAGCCCCGGCGGATGTGCGCTGATCGGACTAGCGCTAGGGTTGACGGCGGTGCAGGGGATCATCGCTGCAGAATGGCTCCTGCTGACCGTGCTGAGGGAGGGTCACCCCGCGTGCCAGTTTCAGCCGCTGGACTTTACGCTAGCCTGTGTGTATGTGCTAGCGCTGCTGCTGGCGGCGCTAGTGACGGCGGCATTAGCGCTGTGCGGGAAGACGCGGCAGTGGCACTGTAGTGTGGTGTGGCTGCTGGTGTCCTGTGTTCTGTCCGTCCTGCTGTGGGTGGCCTGGATCGGGTTCTATGTCTATGGGAACGGGATGCTGGATAAATCTCCAGACTGGGACGACCCGGCGTTAGCGGTAGCGCTTGTAGCTCAGGGCTGGCTGGTACTGCTGTGCCACGCGGCTCCTGAAGCCCACGCCTGTCTCCGCGCTCCACCGCAGCCGTCAGCGCCTGATTATTTCGACACGTCCCAGAATTCCTCACGCATGAGGGAGGCCAGCCTGGACGAGGACATCCCCATGTCCCACCGGCAGTTCGTGGACAACCAGAGATACGCCTTCGACGAAAACGCTGCAGGTTTGGGTGGTGGAGGTCATCATAACGGCAGCGGCGGCACCAGACCCAGCGCCCCCTTCAGGAGTAACGTCTACCAGCCCACTGAGATGACCATGATCCTCAACGGAGGAGCCGTTCCGTCGGCTCCCCCCACATACACCGGCAGACAGCTCTGGTGAAGGAGACTCGGAGAAGAGCGACTGGACAAGAGGAGGCAGAAACCCCTGAGAGATGAGATGCATGCAGACGTGCGGTGATGAAGAAGCCCACAGGGCTCAAATATAGGACTGGGATGCTGGTATGTGCGGGCAAACACCACCGGACACCGTTCCCTTCACCATCAGTAGCTGTAGTGATTCTGAGTTCCTCCACTTTCTGCTGTTCATGTCACTGTCTGAAATACATCTCCACGTACTGGCCTCAGATCTGTCCTGAAGGGATCTCAGTATGCTTCAACAcgggctcattggaaatacaccGCCAAACACGCTGCTCTTACAGTCTCCCCTGAAAACAAGCAGAGTAATCTGACAATGGGGTCTTGTTTTCAAATGGAAATAATATTGTTCAGCTTCACACATTGTCAGATTAATCAGCTCGTTTACCAGAAAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0070062 extracellular exosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043235 receptor complex cellular_component
GO:0019901 protein kinase binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030295 protein kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8162 Predicted to enable protein kinase activator activity and protein kinase binding activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in extracellular exosome; intracellular membrane-bounded organelle; and plasma membrane. Orthologous to human GPRC5B (G protein-coupled receptor class C group 5 member B).

Ensembl:

ensembl_id ENSDART00000155853

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053187 lncRNA downstream 33585 62252993 ~ 62333722 (-) True XLOC_026923
TCONS_00053189 lncRNA downstream 38105 62259482 ~ 62329202 (-) True XLOC_026924
TCONS_00053190 lncRNA downstream 56774 62291855 ~ 62310533 (-) True XLOC_026925
TCONS_00053188 lncRNA downstream 86955 62259482 ~ 62280352 (-) False XLOC_026924
TCONS_00053186 lncRNA downstream 125574 62232068 ~ 62241733 (-) True XLOC_026922
TCONS_00052296 lncRNA upstream 6403 62386549 ~ 62389756 (-) True XLOC_026927
TCONS_00053191 lncRNA upstream 187836 62567982 ~ 62592551 (-) False XLOC_026931
TCONS_00053192 lncRNA upstream 203156 62583302 ~ 62592530 (-) False XLOC_026931
TCONS_00053193 lncRNA upstream 207235 62587381 ~ 62592509 (-) True XLOC_026931
TCONS_00052291 mRNA downstream 172795 62173396 ~ 62194512 (-) True XLOC_026920
TCONS_00052290 mRNA downstream 241606 62091298 ~ 62125701 (-) True XLOC_026919
TCONS_00052289 mRNA downstream 279961 62064805 ~ 62087346 (-) True XLOC_026918
TCONS_00052286 mRNA downstream 774033 61566375 ~ 61593274 (-) False XLOC_026916
TCONS_00052293 mRNA upstream 2515 62382661 ~ 62393453 (-) False XLOC_026927
TCONS_00052294 mRNA upstream 2515 62382661 ~ 62393457 (-) False XLOC_026927
TCONS_00052295 mRNA upstream 2518 62382664 ~ 62393449 (-) False XLOC_026927
TCONS_00052297 mRNA upstream 17572 62397718 ~ 62403550 (-) True XLOC_026928
TCONS_00052298 mRNA upstream 36410 62416556 ~ 62417677 (-) True XLOC_026929
TCONS_00052254 other downstream 1915679 60451500 ~ 60451628 (-) True XLOC_026892
TCONS_00052189 other downstream 5750266 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 5792342 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 6716890 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 6886150 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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