RNA id: TCONS_00053186


Basic Information

Item Value
RNA id TCONS_00053186
length 1135
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_026922
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62232068 ~ 62241733 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGCCATAGCCACACGTGAACATGTAAATGCCCTCTAAATCTAATACCTGGTTGTGCCACCATTAGCAGCAACTGGAAGTAATCAGGCTAGTGTTTCATATCTCTGTGGAGGAATTGTGGACCACTCATCTCTGCAGAATGATTTTAATTAAGCCGTGTCAGAGCATTAATGAAGTTTGAGGTTATTCCACAGCCTCTCGATCAGTTTTAGGTCTGGACTGACTTTATCCCAGATGTAACAGGATGCACACCTTCCAAAAGGTTCCAATTTACCTGCTTTCTTACCTGCTTGAGTGATCCTTTAGGGGGTAGTTTTCAGGGGCTAGATCCCCCTTGTAGGATCTCCCAAGGCAAAAGGTCTTAGGTGACAGGTCAGACTAAATGCAGGGTCAAATACCCCCTATAAAATTAGGGATCATGATGTTAGCCAATACAGCACAGTTAAGGCCTCACCATGGAGCCAGGCCAGGGGTTTGGACTTGTATGCGAGCATATGGTGGCCATGTTTATTCCACAAACCCAGCCAGACTCAACCTGAAGAAGTGACATGGGACTATCTTTCTGCAGGCCCACTGCCGTAAGGAGCCAGTGCAATGTGTAATAGGTGGTGGTCAAATAGCAAGGACCATGACAACCTGCTCATTAGACATAAAAGTGGCTCTTGGGACATGGAATGTCACCTCACAGGAAGGGATAAATGTCTGAGCTTGTGCGGGAGGTTGAACAGTATCAACTAAAGATAGTCAAGCTCACTTCCACACACAGTTTAGGCTCTGGAACTGAACTTCTTAAGAAAGGCTGAAATTTCTTCTAGTCTGGAGTTGCCCACAGTGAGAGGCAGTGGGCTGGTGTGAGCTTGCTTATAGCTCCCCAACTTAGCTGCCATGGGGTGGAACTGTCCCAGCTGAACGAGAAGGTCACTTGCCTGTACATTTGGGTTGCGGAATGGTCTCCCAGATCTGAATCTGAATAGGGTTGTGTTGGACTTTTGCGCTAGTCAGTTAGTCCGCAACAAACACCATGTTTGAGCATGAGAGTGTCCATCAGTGCACATGGCACACACAAGGCCAGAGCTCAATTATAGTCCTTGTGATTGTTTCATCTGATCTCTGATTGTATATCTTGGACACTTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053185 lncRNA downstream 30124 62200072 ~ 62201944 (-) True XLOC_026921
TCONS_00053184 lncRNA downstream 30282 62199188 ~ 62201786 (-) False XLOC_026921
TCONS_00053183 lncRNA downstream 387199 61799123 ~ 61844869 (-) True XLOC_026917
TCONS_00053181 lncRNA downstream 1276058 60949568 ~ 60956010 (-) False XLOC_026901
TCONS_00053182 lncRNA downstream 1276083 60954394 ~ 60955985 (-) True XLOC_026901
TCONS_00053187 lncRNA upstream 11260 62252993 ~ 62333722 (-) True XLOC_026923
TCONS_00053188 lncRNA upstream 17749 62259482 ~ 62280352 (-) False XLOC_026924
TCONS_00053189 lncRNA upstream 17749 62259482 ~ 62329202 (-) True XLOC_026924
TCONS_00053190 lncRNA upstream 50122 62291855 ~ 62310533 (-) True XLOC_026925
TCONS_00052296 lncRNA upstream 144816 62386549 ~ 62389756 (-) True XLOC_026927
TCONS_00052291 mRNA downstream 37556 62173396 ~ 62194512 (-) True XLOC_026920
TCONS_00052290 mRNA downstream 106367 62091298 ~ 62125701 (-) True XLOC_026919
TCONS_00052289 mRNA downstream 144722 62064805 ~ 62087346 (-) True XLOC_026918
TCONS_00052287 mRNA downstream 639300 61566601 ~ 61592768 (-) False XLOC_026916
TCONS_00052292 mRNA upstream 125574 62367307 ~ 62380146 (-) True XLOC_026926
TCONS_00052293 mRNA upstream 140928 62382661 ~ 62393453 (-) False XLOC_026927
TCONS_00052294 mRNA upstream 140928 62382661 ~ 62393457 (-) False XLOC_026927
TCONS_00052295 mRNA upstream 140931 62382664 ~ 62393449 (-) False XLOC_026927
TCONS_00052297 mRNA upstream 155985 62397718 ~ 62403550 (-) True XLOC_026928
TCONS_00052254 other downstream 1780440 60451500 ~ 60451628 (-) True XLOC_026892
TCONS_00052189 other downstream 5615027 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 5657103 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 6581651 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 6750911 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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