RNA id: TCONS_00052298


Basic Information

Item Value
RNA id TCONS_00052298
length 1122
RNA type mRNA
GC content 0.55
exon number 1
gene id XLOC_026929
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62416556 ~ 62417677 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATTCCTGGACATATTGGTTCTCTCCTAGTTACTACTCCACTAACCTGTCTGGATATTCCCTGTACGACGGCCTGCTGAACATATCTGAGGAGGAAACCCAGCGCAACGAGCCCGAGCAGCACCTGACCAACACTAACACGGCGGTGGTCACCGTCATGTATTTCCTGGTGTGTGTGGTCGGGCTGTGCGGAAACGCTCTGGTTATTTACGTGATCCTGCGCTACGCTAAGATGAAGACGGTCACCAATATCTACATCCTGAACCTGGCGGTGGCGGACATTCTGTTCATGCTCAGCTTGCCCTTCATTGCGATCCAGCTGGCGATGGTGCACTGGCCGTTTGGGGCGACGATGTGTCACGTGGTCATCACCATAGACTCCCTGAACCAGTTCACCAGTATCTTCTGCCTGATGGTGATGAGCATTGATCGATACCTCGCTGTGGTGCACCCCATGAAGTCGATCAAATGGAGGAAGCCACAAGTGGCGAAGGCCACCAACGTAGCGGTGTGGGTGGTGTCCCTACTGGTCATCCTCCCGGTAGTGTTCTACAGCGGGCTGATCACTAAAGCTGAAGGGTGCTTCTGCAGTATCGTGTGGCCGGATCCGCAGGGAGCCTACCAAACCGCCTTCATGATCTACACCTTCCTCCTGGGGTTCTTCCTCCCGCTGATGGTCATCTGCCTGTGCTATCTGCTGATCATCATCAAGGTCAAGTCCTCGGGGATCAAGGTGAGCTCCAGCAAGCGCAGGTATTCAGAGAAGAAGGTGACGCGGCTGGTGTCGGTGGTGGTGCTGGTGTTTGTCTTCTGCTGGCTGCCCTTCTACATCTTCAACATGACCTCGGTTACGGGCACGATCAGCGATACGCCGTTTCTGCGCAGCGTGTTTGCGTTCGTGGTGGTGCTGGGATACGCCAACAGCTGCGCTAACCCCATATTATACGCCTTCCTGTCGGAGAACTTCCGAAAGAGCTTCCAGAATGTTCTGTGCTTCAAGAAAGAGGCGCTGAGCGACGCGGCCCGCTCCAACAGCAGACTGGACCGGCCACAGATTCTAAACGATCCGATGGAGACCCAACACACAGTGATCAACGGAGACCTGCAGACCAGCCTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004994 somatostatin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-727 Predicted to enable somatostatin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human SSTR2 (somatostatin receptor 2).

Ensembl:

ensembl_id ENSDART00000101888

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052296 lncRNA downstream 26800 62386549 ~ 62389756 (-) True XLOC_026927
TCONS_00053187 lncRNA downstream 82834 62252993 ~ 62333722 (-) True XLOC_026923
TCONS_00053191 lncRNA upstream 150305 62567982 ~ 62592551 (-) False XLOC_026931
TCONS_00053192 lncRNA upstream 165625 62583302 ~ 62592530 (-) False XLOC_026931
TCONS_00053193 lncRNA upstream 169704 62587381 ~ 62592509 (-) True XLOC_026931
TCONS_00052297 mRNA downstream 13006 62397718 ~ 62403550 (-) True XLOC_026928
TCONS_00052294 mRNA downstream 23099 62382661 ~ 62393457 (-) False XLOC_026927
TCONS_00052293 mRNA downstream 23103 62382661 ~ 62393453 (-) False XLOC_026927
TCONS_00052295 mRNA downstream 23107 62382664 ~ 62393449 (-) False XLOC_026927
TCONS_00052292 mRNA downstream 36410 62367307 ~ 62380146 (-) True XLOC_026926
TCONS_00052299 mRNA upstream 103364 62521041 ~ 62527696 (-) False XLOC_026930
TCONS_00052300 mRNA upstream 107496 62525173 ~ 62527675 (-) True XLOC_026930
TCONS_00052254 other downstream 1964928 60451500 ~ 60451628 (-) True XLOC_026892
TCONS_00052189 other downstream 5799515 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 5841591 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 6766139 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 6935399 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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