RNA id: TCONS_00053191


Basic Information

Item Value
RNA id TCONS_00053191
length 886
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id XLOC_026931
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62567982 ~ 62592551 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAGGTATAGCAGGTGAATCTGGCGgccattttaaaaaagaaaggtGTTTGGTACTCAGCAGGTGTTGAAGAAAGCTTGCTCTGCTTAAAGTTTGATCTGCTAATAGCTTCTATTACACATTACCTGGAgaattttgtgttttgtgttctcTGTGACCAGTGAACAGTCTCTGACAGAACTTGAACGGATTacccttttttgttttgttttgttatttccaCTGCAATCCAAACATCTCAGAGAAGAAACAGCGGATATCTACAGCACTAAAGACAACAGCACAGCACCAAAACACAGAGCCGAGACACAGGGCCAGGTCACGGGGCAGCAGAAACCCAGACTCCCCTCTGCCAGACGCTCCTTCAGGGGGATCCGGAGGCGAGGGGTATAGttcctccagtgtgtcctgggtgtCCCCTGGTGAGAAAACCCTGAACACTGCACGAGTGCCTTAAGTATTTGTGTGGGGTCATGGTGCAATAGTCCATCTTCCTCCAACACCTTGAACAAAGCTGCAAGAGAGCTGGCGATGGACCCCTGATGGAGTTCCCAGATCTGGTCTGGCTGTCCATCTGTAAAAGCCATCACGCCGGCGCTGCTGTCCCACTTACCATCAATAAGAGATATAAGACTTTCCTCAGCATGAGCCATGAGCCCCGCGAGAGCACACTGGGACATGGAGCACACAATATTATACTCGCAGACTAATAATTTATCCACATAATGTGCTTCTGGATTTACAGAGACTCACTGACTACTGCTAGATGGCTGAAAAGGTCTTCAGTGTTATAGATGAAGCCGGTGTGTTATCCTGAGAGTGTGTTGGACGTGAGTTCCTGCTGCAGGTTAATGATTGAGCCGCTGGCTGGGATTGAGCTATTTATT

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0012505 endomembrane system cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052296 lncRNA downstream 178226 62386549 ~ 62389756 (-) True XLOC_026927
TCONS_00053187 lncRNA downstream 234260 62252993 ~ 62333722 (-) True XLOC_026923
TCONS_00053189 lncRNA downstream 238780 62259482 ~ 62329202 (-) True XLOC_026924
TCONS_00053190 lncRNA downstream 257449 62291855 ~ 62310533 (-) True XLOC_026925
TCONS_00053188 lncRNA downstream 287630 62259482 ~ 62280352 (-) False XLOC_026924
TCONS_00052299 mRNA downstream 40286 62521041 ~ 62527696 (-) False XLOC_026930
TCONS_00052300 mRNA downstream 40307 62525173 ~ 62527675 (-) True XLOC_026930
TCONS_00052298 mRNA downstream 150305 62416556 ~ 62417677 (-) True XLOC_026929
TCONS_00052297 mRNA downstream 164432 62397718 ~ 62403550 (-) True XLOC_026928
TCONS_00052294 mRNA downstream 174525 62382661 ~ 62393457 (-) False XLOC_026927
TCONS_00052254 other downstream 2116354 60451500 ~ 60451628 (-) True XLOC_026892
TCONS_00052189 other downstream 5950941 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 5993017 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 6917565 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 7086825 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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