XLOC_026896 (ubald2)


Basic Information

Item Value
gene id XLOC_026896
gene name ubald2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60684909 ~ 60711127 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052258
GAGCGGGCGTGAAGGGAAGGGCCTGTTTTAACGGACACACAAGCGGTTTTGCGTTCACGGGAGCACCGAATACCGGAGATGTCGGTGAATATGGACGAATTAAGGCATCAAGTGATGATTAACCAGTTTGTTTTGACCGCGGGATGTGCGGCGGATCAGGCGAAGCAGCTTCTCCAGGCGGCGCACTGGCAGTTTGAGACGGCCCTGAGCTCGTTTTTCCAGGAGGCTAACATCCCCAGTCATCACCAGATGATGTGCACTCCACGCAACACTCCAGCCACCCCGCCCAACTTCCCGGACGCCATCACGATGTTCTCCAAGCTGCGAGCGTCCGAGTGCCCGGGCGGAGGCGTGTCTGCGGGCGGAGGCTCCTCAGCGCAGGTGTCTATGGCCTGTTCACCTCCTCACGCCTCCTTCTGGGCCTCCTCGCCCCCAAACCAGCAGCCCGTGTGGCTCCCGCCGTCCTCCCCGACAGGACATCACACACtccaccatcaccaccaccacatGCACCCGCCGCCCTCGTGGCCACCTGTTTCACAGCCCGCCAACGGCCCGCAAACTCCCGTCATTTCAGCCCTGCACGGTCAGAGATGAGGACGAACCTCGCTCAGCGTTTAACAGAGACTTCTGCGACGGCCACCGGGGGGGGGGGGAACACCTGGTTTGTCTGTTTTCTAAACGAACAATCTCGATTTTGGAGATCTCGTGtgtatttttgttcttttatCTCGATTTCTGTCCTGGGAGGAACCACTATGAACGGAGGTTATAACGAGGCTGTGTTTGTTTCGCTCTTCATCACTGATTAAAAGCCACGGAAATTCGGACGGGAcgatttttatgtgtgtgttttgacgtCTGCAGCGCTGTCAGCAACACACACTCGCAATAAAACTGCTGACAGACGAGACTCTGTTTCATTATCGTTGGTGGTCGTGCCGTTCTGCATCCCAGGATGAGCTGTTTCAGATTCATCACGGACTTTAATCTGCTCCAAATGCACATTATTTTAGTGTGCATGTCCTCAGACTGAGATATTATCATGGTTCAGATTAAACTCAACCCAGCgtaag

Function

symbol description
ubald2 Is expressed in axial mesoderm; central nervous system; and somite. Orthologous to human UBALD2 (UBA like domain containing 2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-185 Is expressed in axial mesoderm; central nervous system; and somite. Orthologous to human UBALD2 (UBA like domain containing 2).

Ensembl:

ensembl_id ENSDARG00000115335

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052258 True 1076 mRNA 0.55 3 60684909 60711127

Neighbor

gene id symbol gene type direction distance location
XLOC_026895 NA coding downstream 82477 60594135 ~ 60602432 (-)
XLOC_026894 jmjd6 coding downstream 95617 60575113 ~ 60589292 (-)
XLOC_026893 si:ch73-366l1.5 coding downstream 113691 60525982 ~ 60571218 (-)
XLOC_026892 AL954150.1 coding downstream 233281 60451500 ~ 60451628 (-)
XLOC_026891 si:ch211-214b16.4 coding downstream 283083 60338988 ~ 60401826 (-)
XLOC_026897 anks4b coding upstream 101724 60812851 ~ 60827402 (-)
XLOC_026898 DXO coding upstream 139922 60851049 ~ 60856157 (-)
XLOC_026899 NA coding upstream 145895 60857022 ~ 60861145 (-)
XLOC_026900 PITPNC1 coding upstream 151314 60862441 ~ 60888183 (-)
XLOC_026901 NA coding upstream 238441 60949568 ~ 60956010 (-)
XLOC_026886 NA non-coding downstream 557348 60126527 ~ 60127561 (-)
XLOC_026885 NA non-coding downstream 615958 60067382 ~ 60068951 (-)
XLOC_026884 NA non-coding downstream 629150 60036101 ~ 60055759 (-)
XLOC_026917 NA non-coding upstream 1087996 61799123 ~ 61844869 (-)
XLOC_026921 NA non-coding upstream 1488061 62199188 ~ 62201944 (-)
XLOC_026922 NA non-coding upstream 1520941 62232068 ~ 62241733 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G509654 NA unknown CI01000351 null 1234498 ~ 1234756 (-)