XLOC_027308


Basic Information

Item Value
gene id XLOC_027308
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20554607 ~ 20593055 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057724
TGATTGGAGCTGCTGCTGGAGCTTTGGTGATTGTGATGTTGTGTGCCGTTACATATACGTGTGTCCGGTAAGTGTATTAATGTCAATAAGAATATTATACACAATGTCCTTGCTTATCCTTGTCTCGCACCATTAGTGTATTCATAACTTAATGTAGAATGAGCAAGAATAAAAGGTTAAATATTCCTCTTAAAATTATTAAAGGGAAAACCTGCTGCATCTTTTTAGattaatgtgatttaaaaaaataattaacctGTATAATTATGACTATATTATCACACACCGTTATAGATCCTCTTGTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057724 True 307 lncRNA 0.33 2 20554607 20593055

Neighbor

gene id symbol gene type direction distance location
XLOC_027306 BX248410.5 coding upstream 19650 20531757 ~ 20534957 (+)
XLOC_027305 ints13 coding upstream 54939 20486041 ~ 20499668 (+)
XLOC_027304 cacna1c coding upstream 79635 20318127 ~ 20474972 (+)
XLOC_027303 lrtm2a coding upstream 288881 20255160 ~ 20265726 (+)
XLOC_027302 ccdc146 coding upstream 355383 20177526 ~ 20199224 (+)
XLOC_027313 nav3 coding downstream 219845 20812900 ~ 20987564 (+)
XLOC_027314 NA coding downstream 435729 21028784 ~ 21032756 (+)
XLOC_027315 syt1a coding downstream 536697 21129752 ~ 21315399 (+)
XLOC_027316 NA coding downstream 729932 21322987 ~ 21323980 (+)
XLOC_027317 BX569790.1 coding downstream 1060554 21653609 ~ 21696284 (+)
XLOC_027298 NA non-coding upstream 536063 19969910 ~ 20018544 (+)
XLOC_027297 NA non-coding upstream 623813 19906862 ~ 19930794 (+)
XLOC_027294 NA non-coding upstream 1237333 19302978 ~ 19317274 (+)
XLOC_027292 BX649263.1 non-coding upstream 1457163 19097324 ~ 19097444 (+)
XLOC_027320 BX537156.1 non-coding downstream 1150808 21743863 ~ 21743984 (+)
XLOC_027321 BX537308.2 non-coding downstream 1248798 21841853 ~ 21841969 (+)
XLOC_027291 NA non-coding upstream 1452786 19034177 ~ 19101821 (+)

Expression


Co-expression Network