XLOC_027316


Basic Information

Item Value
gene id XLOC_027316
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 21322987 ~ 21323980 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057725
GTTTGTTTTGAAGTTTTATTGAATCTTCTGTACATGCATTAGGTAAAGCAGCAGGAGAGCGGTATCTCCCAGCTGATATAGtgtaaaaagaaaagcaaaaaaaaggaaGGAGCCCTGTTAGAAGTTTGTGGAATACATGCGATTAGCCCTGTAGCGCAGCAACAGTGTATATACAAAGCTAAAAGTGTTGACGAAACAGAGAATGTAAAACAGTTCATGTGATACGAgcgtgttggagcagggttggaactgaactgtACAGGGCTGAAGCCCTCGAGGAAGTGTGTTTGACATGTGTGGTGTACAGGCTAGACTTGTGTGTAAATGTAGAGGGTGATAAGCTCCACGTGTTGATGAGGTGAAAGAACTTGTAAACATTTGATGAAGGTGTGAAGAAGTGATGATAAGAAATAATAACGTGTCCATTAGTTGTGAGTGAataatgctgctgctgctgctgcttataataataacgactacgacgacgatgatgatgatgataataataaaatgttgagATGAGCAAATGAATAGAAAGAGGCTGAATTTTGGTGAGACACTACGTACATTCAAAGTGATGTCCTCTCTGTAGTGTCCTGCATAAAGGGTCATAGGCtatgtacacacacatttacattaaatAGAAAGCACATTCCTGTTAGGATCCTGGCTGGCTTGGAGTAAGAGCGCAGAGGTGGGCACACTTCCACAATCCAAAGCGTCCATAGGCTGTGCACAGGTCCGAGAGCAACAGACGTGCAGAGCAGAGGATGTAAATGGCAGAGATGTTATGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057725 True 795 lncRNA 0.42 2 21322987 21323980

Neighbor

gene id symbol gene type direction distance location
XLOC_027315 syt1a coding upstream 7588 21129752 ~ 21315399 (+)
XLOC_027314 NA coding upstream 290231 21028784 ~ 21032756 (+)
XLOC_027313 nav3 coding upstream 335423 20812900 ~ 20987564 (+)
XLOC_027312 BX248410.3 coding upstream 740003 20576857 ~ 20582984 (+)
XLOC_027311 BX248410.2 coding upstream 751685 20566371 ~ 20571302 (+)
XLOC_027317 BX569790.1 coding downstream 329629 21653609 ~ 21696284 (+)
XLOC_027318 myf6 coding downstream 393813 21717793 ~ 21720943 (+)
XLOC_027319 myf5 coding downstream 417248 21741228 ~ 21745107 (+)
XLOC_027320 BX537156.1 coding downstream 419883 21743863 ~ 21743984 (+)
XLOC_027321 BX537308.2 coding downstream 517873 21841853 ~ 21841969 (+)
XLOC_027308 NA non-coding upstream 729932 20554607 ~ 20593055 (+)
XLOC_027310 NA non-coding upstream 761770 20560702 ~ 20561217 (+)
XLOC_027309 NA non-coding upstream 762634 20558526 ~ 20560353 (+)
XLOC_027306 BX248410.5 non-coding upstream 788030 20531757 ~ 20534957 (+)
XLOC_027323 BX537308.1 non-coding downstream 642114 21966094 ~ 21967444 (+)
XLOC_027324 NA non-coding downstream 698645 22022625 ~ 22113703 (+)

Expression


Co-expression Network