XLOC_027339


Basic Information

Item Value
gene id XLOC_027339
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 23432029 ~ 23505594 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057730
GTTTCACTGCCCCTACGAATGGATCACCTCCCGGAAGTGCCATTCAAAcgctgtaaaaaacaaaacaaaacactacacAAACAAATTGAACCTTCTGGACTCCAGTCTTCACCTTATTTCTACCCTCCATTACATGGTTAAAAGCATCAGCAAGGCAAGATCCCTCTCCACAATCTCATGCTGAAGATTCCCACAGGAATCCGCCTGTTGAGTGCTGAACACTCACTGCAGAGAAGGGTCAGAGAGGGTCTCTTTATATGGCCAAGTTTCTTTCTCTCTGTGCATCTATAAAACAACAAACTGCAACTGAATAAATGGAGATGTCACACCAGCAGTGAATCCTCAGAGAACTGCTTCAGAATTTGTGTGGGCTGTGAGATCCTCGTCTGGTCTGGACAGGGTGTAATCCGTCACCGTCCTCATCCTGCTATTGAGTCGGCAGGATTTAAGACACCATGGAGATTTGTGGAGAAAGCTCCTACAGCAGCCATTGTCTTTACTGCCCCATCAGAGGAGTGAGAGTCACTCTGTTGCTGTGAGTGGCAGGATGTGGAGGACTGAAAAGGATTACTTCATGAGGTCAAGGCCTCCAAAAGAACCTTCTTCTCAGAGACGGCTGTAGACGAGTGAAACTTCATCCAGATAAATTCCCACACATCCTCATCCATCAGAGAAACACCTGTGCAGTACACAATGTCCCGGACGTTGGGTGGAATCCTGCGAGACAGAAGATTGAATAACTGAGTGAAGACAAGAGCTGAAAACACATTTATAGTTGGACACATCTAGAGGAGTCAGTGAAGTTCCTTGGGATTGTTCAAAGATAGCAAATCACAAGCCAATCTTTCACCTCCAGAAGAATCAGTGAAAAACAGCGACTAGAGGTCATTGGTGAAGAAAGGACACTAAAGGACACATCTGGCAGACCAAAACTTCAGCTGGCAGTTACAGAACTACAGTATTGAATCTGAT

Function

GO:

id name namespace
GO:0016073 snRNA metabolic process biological_process
GO:0000075 cell cycle checkpoint biological_process
GO:0000077 DNA damage checkpoint biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031297 replication fork processing biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0031570 DNA integrity checkpoint biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0045005 DNA-dependent DNA replication maintenance of fidelity biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0140098 catalytic activity, acting on RNA molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057730 True 972 lncRNA 0.45 7 23432029 23505594

Neighbor

gene id symbol gene type direction distance location
XLOC_027336 trhde.2 coding upstream 24000 23223881 ~ 23408029 (+)
XLOC_027338 AL935196.1 coding upstream 52651 23379262 ~ 23379378 (+)
XLOC_027337 NA coding upstream 130801 23300889 ~ 23301228 (+)
XLOC_027335 mdm2 coding upstream 295834 23125689 ~ 23136195 (+)
XLOC_027334 slc35e3 coding upstream 309634 23117557 ~ 23122395 (+)
XLOC_027340 NA coding downstream 44280 23549874 ~ 23735971 (+)
XLOC_027341 NA coding downstream 338990 23844584 ~ 23851648 (+)
XLOC_027342 NA coding downstream 374800 23880394 ~ 23888794 (+)
XLOC_027343 NA coding downstream 1252754 24758348 ~ 24758781 (+)
XLOC_027344 NA coding downstream 1508455 25014049 ~ 25016268 (+)
XLOC_027331 BX537168.1 non-coding upstream 868464 22547576 ~ 22563565 (+)
XLOC_027329 NA non-coding upstream 1005392 22424450 ~ 22426637 (+)
XLOC_027326 NA non-coding upstream 1089194 22338519 ~ 22342835 (+)

Expression


Co-expression Network