XLOC_027371 (cerk)


Basic Information

Item Value
gene id XLOC_027371
gene name cerk
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 27898833 ~ 27953778 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053857
ATGGAGAAGCAGTCGACATTGTTGTGTTCTGAGCTGAGTGTTCAGCGCAGACTGTATGAGGTCACATTAAACTGCGCGATTCTCGCGTGGAAAGACGTACAAAACGCCAAAAAACACACCGGACGCGCCATATATGGAGCTGTCAAAGCTGGTAGTCATTGTGTCCCAGTGTGTGAGATTATAGCTGTTCAGGAAAAGGAAGATGACTCCCCATGTAAAGACACTGGGAAATGGCAGAAAGTTCCCCAGAGCCCGACAGACTCCTGCCAGCACGCTTTCACAGTGTACTATGTGGAGAGGACGAGACAGCACTGCTGGCGGTGCAGCAACGTGACTTTCCAATACTCCGAACATTCCCTATGCCTGCTCTGGATACAAACGATTAAGGAACAGCTAGCATTATTGAGTGCCCAATCGACCGAAGAGCTTGCTGGTGTACATCAACCCCTACGGAGGAAAACAACGCGGCAAGCAGATTTACGACCACAAAGTGGCCCCCATCTTTTCCCGGGCTTCCATTTCCACCGACGTGATTGGCCCCATTCATTTTCAGCGCATCCCTCCGAGTTACGCTTTTACATCATCGCTGATGGTAAAGAACCGGTAATGAAATGTACCGGGGATTGTTTTTCACCACGAGTTCAGCTTCATCATCTGATGCAGCTGATTGATGGTCTCCATCAAGCTAGCAGAAAAATGCAATTTAACTGCCAGATGAACATAATGATGTTTCTCCCCCCTCTCTATCATCAACCTGGTAACAATGGCTTTTCCCTTTTTGTTTCTATAGTTACAGAGCATGCAAATCATGCCAGAGACCACTTGAAGGCAGAGGCTGATCTGAAGAAGTATGATGGTGTGGTGTGTGTTGGAGGAGATGGCATGTTCAGCGAGATTATGCATGGCCTTGTCTCCCGAACGCAACAAGACGCCGGTGTAGACGAGAACTCAACAGAAGAGACTCTTATTCCGTGTGGACTTCGCATCGGCATTATTCCTGCAGGTTCCACTGACTGTATATGCTATGCCACGGTTGGCTCAAATGACCCCGTCACCTCAGCGCTGCACATGGTCGTGGGTGATTCTCAACCAATGGATGTCTGCTCAGTGCACAGCGATGATCGTTTCCTGCGTTACTCTGTCTCACTGTTGGGTTATGGTTTCTATGGAGATGTGCTAAAAGACAGCGAGAGGAAGAGATGGATGGGTCCTGCTCGTTACAATATCTCAGgggttaaaACGTTTCTGTCACATCGCTACTATGAGGGAACCGTGTCTTTCCTACCTGCAGAAGAGAACTTGGGAACTCCAAGAGACAAAGTGCAGTGTCGATCTGGGTGCAGCATCTGCCGTCGATCCTCATCCGACAAACTCCTCAGCAAAGAAGACGAAGCCAGCGTTTCTGATGTCGaTTGCCGGGACACCTGGACGGTCATCAGGGGGAAGTTCTTGGCCATTAATGCCGCCAACATGAGCTGTGCATGTCCTCGCAGTCCTAAAGGTCTGTCGCCGTCCGCACACCTAGCAGATGGAACGACTGACCTCATCCTCGTCAGAAAGTGCTCCAGAGTCGACTTCCTGCGACACCTGCTGCGACACACCAATAAGAAGGACCAGTTCGATCACTCATTTGTGGAGGTGTACCGAGTCAAGCAATTCCGCTTCACTCCCAGGTTTCAGGAGTGTGGCTCAGAAATGGACCTGAGAGAGAGCAGGGCGGGAGGCAAACACTTCTTCTGTCAGATCTGCAGGGAAAACAGAGCCTGTGGCTGCATGTCGTCCCAGAGCAACTGGAACTGTGACGGAGAGATCCTTCCACACACTGCCATTCAAGTCCGAGTCCACTGCCAGTTGATCAAGCTGTTTGCGAGAGGAATCGAAGAGCAGCCGGTGTTTGAGGATCTGTACGCTCACTGTCAACTCAACAATCCTCCAAATCATGAGCCGTGA

Function

symbol description
cerk Predicted to enable ceramide kinase activity. Predicted to be involved in ceramide metabolic process and phosphorylation. Orthologous to human CERK (ceramide kinase).

GO:

id name namespace
GO:0006665 sphingolipid metabolic process biological_process
GO:0006672 ceramide metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0001727 lipid kinase activity molecular_function
GO:0001729 ceramide kinase activity molecular_function
GO:0003951 NAD+ kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism

ZFIN:

id description
ZDB-GENE-041210-210 Predicted to enable ceramide kinase activity. Predicted to be involved in ceramide metabolic process and phosphorylation. Orthologous to human CERK (ceramide kinase).

Ensembl:

ensembl_id ENSDARG00000069169

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053857 True 1950 mRNA 0.50 13 27898833 27953778

Neighbor

gene id symbol gene type direction distance location
XLOC_027370 brd1a coding upstream 748419 27130412 ~ 27150414 (+)
XLOC_027369 alg12 coding upstream 789085 27100528 ~ 27109748 (+)
XLOC_027367 slc6a1l coding upstream 818974 26972862 ~ 27079859 (+)
XLOC_027368 CR749777.1 coding upstream 876108 27018663 ~ 27022725 (+)
XLOC_027366 NA coding upstream 1062158 26831255 ~ 26836675 (+)
XLOC_027372 CT583696.1 coding downstream 161829 28115607 ~ 28115721 (+)
XLOC_027373 si:ch73-263o4.3 coding downstream 401280 28355058 ~ 28373257 (+)
XLOC_027374 alg10 coding downstream 420850 28374628 ~ 28380308 (+)
XLOC_027375 CU694442.1 coding downstream 430659 28384437 ~ 28407131 (+)
XLOC_027376 znf1041 coding downstream 465051 28418829 ~ 28424193 (+)
XLOC_027365 BX088697.1 non-coding upstream 1328020 26570698 ~ 26570813 (+)
XLOC_027357 NA non-coding upstream 2143484 25754037 ~ 25755349 (+)
XLOC_027345 NA non-coding upstream 2808986 25084095 ~ 25089847 (+)
XLOC_027344 NA non-coding upstream 2882565 25014049 ~ 25016268 (+)
XLOC_027378 NA non-coding downstream 679469 28633247 ~ 28635544 (+)
XLOC_027379 NA non-coding downstream 739488 28693266 ~ 28710065 (+)
XLOC_027380 dre-mir-430a-2 non-coding downstream 741172 28694950 ~ 28695031 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000133_00868719_00901792 CERK coding CI01000133 null 868719 ~ 901827 (+)