XLOC_027375 (CU694442.1)


Basic Information

Item Value
gene id XLOC_027375
gene name CU694442.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28384437 ~ 28407131 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053865
atggcagaggagcgagtaaaggactctctctcagagaaacacagGGTGAGATCaagatcatgtgtgtccagctctatgtctctgaagagtgactgctCAAAAGATTATCCACCagtgttcagtcagaaaacgccATCATCTGCCAAAAgTGTTGAACATGAGTTACCAGATTCAGGAGGCGAGACTCACAAGAGCCACAAGAGTTTCAAAGACAATCTCCTGAAGATCTTCCAGaatcttgagagcaaaATTATCACATTTCTAAAGAATGAAATCGAAAAGTTTAAGAAAATCGTACAAGAAGAAAACAGACAAGACTTTGTAAAGGACTTTAATGAGAACAGATGCAgtatcacagaagcagctcttgatatccaatcttcttcctgagagagatgaagcaagatgAAGCTGCTAATACTCTTGAGGGCGAGCTGTTCTTCATTAACCAGTTAAAATGcagcctgaagaagaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacaTCATCAATCAGTAGAcatacaggttgaatgcaaacatttgtttgaagcaccTGAACAGGACAAGCAGATCAGAATTgccctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaaatttgttctggattgggctgaaggaaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttgaaggagaaagaaaaacaaagtttgaaagacctcataactcagttttttccAGAGACTAAAGGGCTGAACCTTACACAAAGGACACGATTCAAaatcctgttcatccttgatggattggatgaatgtcgtcttcctttGAACTTTGCTGGCAATGAGATGTGTCAAGATGTATCGTCAGCAGTCTCTCTAGATGTTCTCCTGAcaaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattccttcTGACTGTATCGACcagctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagaccagaatcaggccagagaaattATTGATCACATTAAAAAGTCAaggagtctctttattatgtgccacatcccagttttctgctggatttcagccactgttctccagaacgtTTTGAAGGAGAAAAGTAACACTGAACTGGAACACAGGGCTTGGGCTGAAACATTGCAGAAATCTCctaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatgggGAAAACACACCAGATGTTTCCTGGGATAAAAACCTCATcatttcactggggaaactggccttccagcagctggcTAGAAACAATGTGATTTTCTATAtgagcgatctgaaagactgtggcattgacgtatataaggcatcggtgtactcaggcatgtgtacccagatctttaggaaggagacgggaatcattcttggtaccatgtactgctttcttcacttgagcctTCAAGAGTTCATagcagccctttatcaacatctgtTTCTTGACATTGACAAGAAGCGTGTATCTATTTTTAGacagaaaagcaaaaataaaggCATAATTAATATGCTAAAGGCTGCAGTAGACAAAGCTCTGGAAAGTGAcaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccaatcgagaactcttacgaggcctgttgacacagcaggacAACAGTGACTCgggcaaagaggaaataaatgtttacatcaagcagaaacttgaagcgaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaatgaccaaactctgctgaaagagattcagtctcaccttAGTGAAGGAAGGCTGTCATCTGCTgtcctttcacctgcccagtggtctgctctggtctttttgttgttgacctcagaggaggagctggaggtgtttgagcttcagaaattccagaaatcagacgagtgtctcaaCAGACTATCAGCCGTCGtcaaaacctccaaaagagctctgctaccgTGCTGCAATCTCACTTTTCGggcttgtgagagtttgtcttcagctcttcaatcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgaggGACTGACGAGTcaaaactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgagctcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagcaAAGCTGCTCTCTGAAAAACTgaaggatccaaactacacactggacaaactcaatctggatcatggaggacacaaaaggattacagcaggaccacgcaaatATGCCTGTTTTCTcacactggatccaaacacagcaaacactgaactcattctgtctgaggacaACAGAAAGGTGACGTGTGTGTGGAAGAATCAGTCATATCCTGATCATCCAAACAGATTTGATTATGCgtctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagactGAATGGAGTGGAGATGTGTGTATAGCAGTGTCATATGAGAGCATAAGCAGGAAGGGAGCTGGTAAAGAGTGTTGGTTTGGCTTTAAtgatcagtcctggagtttgttttGCTCTTGCTCTAGTTTCTCATTTAGACACAATAACACAGAGACTCGTCTCCCAGTAAAGCCGCTCAGCagtagaataggagtgtttgtggatcacagtgcaggaactctgaccTTCTACAACATCTACAatgacacaatgagcctcatccactcaatccagaccacattcactgagccgctctatcCTGGGTTTAGTGTTGATTCCGGAGTATCAATGAAATTGTGCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000075820

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053865 True 3143 unprocessed_pseudogene 0.44 9 28384437 28407131

Neighbor

gene id symbol gene type direction distance location
XLOC_027374 alg10 coding upstream 4129 28374628 ~ 28380308 (+)
XLOC_027373 si:ch73-263o4.3 coding upstream 11180 28355058 ~ 28373257 (+)
XLOC_027372 CT583696.1 coding upstream 268716 28115607 ~ 28115721 (+)
XLOC_027371 cerk coding upstream 430659 27898833 ~ 27953778 (+)
XLOC_027370 brd1a coding upstream 1234023 27130412 ~ 27150414 (+)
XLOC_027376 znf1041 coding downstream 11698 28418829 ~ 28424193 (+)
XLOC_027377 znf1067 coding downstream 35092 28442223 ~ 28504516 (+)
XLOC_027378 NA coding downstream 226116 28633247 ~ 28635544 (+)
XLOC_027379 NA coding downstream 286135 28693266 ~ 28710065 (+)
XLOC_027380 dre-mir-430a-2 coding downstream 287819 28694950 ~ 28695031 (+)
XLOC_027366 NA non-coding upstream 1547762 26831255 ~ 26836675 (+)
XLOC_027365 BX088697.1 non-coding upstream 1813624 26570698 ~ 26570813 (+)
XLOC_027357 NA non-coding upstream 2629088 25754037 ~ 25755349 (+)
XLOC_027345 NA non-coding upstream 3294590 25084095 ~ 25089847 (+)
XLOC_027381 dre-mir-430c-1 non-coding downstream 287982 28695113 ~ 28695185 (+)
XLOC_027382 dre-mir-430b-10 non-coding downstream 288239 28695370 ~ 28695450 (+)

Expression


Co-expression Network