XLOC_002754 (vamp2)


Basic Information

Item Value
gene id XLOC_002754
gene name vamp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22838364 ~ 22845485 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005105
GACAGAAGCTAGTAGCTGTAGAGCGCCCTAATATTAAGGGAATATAAACGAGAGGCGCGGCACACCGGCGGaaaagattaaaaacaaatcttaaaaaaCACAAGGACTACCGCTTCACTGGAATAACCTGGAGAGCGCATTATTTATCCCGGAGACGGGGAGAAACGCCTGAAGCAGAGCGTTCATCCACACGCTTCTTGTAGACGCACATAAAACCCGGTTCAAAATGTCTGCCCCAGCCGGAGCCCCTGCCCCAGAAGGAGGAAACCAAGCTCCTCCAAACCTCACCAGCAATCGTCGCTTACAGCAGACACAGGCTCAGGTGGATGAGGTCGTGGATATTATGCGTGTAAACGTAGACAAGGTTCTGGAAAGGGACCAGAAGCTATCAGAACTGGATGATCGGGCTGATGCCCTGCAGGCTGGAGCCTCACAGTTCGAGACCAGCGCCGCCAAGCTCAAGAATAAATACTGGTGGAAGAATGCCAAGATGATGATTATCCTGGGGGTGATATGCGTGATTGTCCTCATTATAATCATTGTGTACTTCAGCACCTAAAGCGCAACATTCCTACCCCACTCTGAGCTCACGAACGCCCAATTCCAAGCCACAGAGAAATCCTTCCCCGAAAAAAAAAGATGGGAGCAACGACTTCTCACAAGAATCGATTTATTTGCCCTCAAAGAGTATAAATCCGCCCCTATCCTGAGCCCCCCTGTGCCCTGCCTCGACTGCCTCCCAGCTGGGCCCCTGTCACTCCTCGTTCGTCCTGTCCGTGAGTGTGTGGCCATGTCTCCTCTGTAAATACCTCCGGCTTTTCTGAAATACTGTTCATACTCCAAACCTCTGATTACTTGTGACAACGAtgaccaatttaaaaaaaaaaagaaagaaaa

Function

symbol description
vamp2 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Located in cleavage furrow and vesicle. Is expressed in blastomere; head; nervous system; and pancreatic system. Orthologous to human VAMP2 (vesicle associated membrane protein 2).

GO:

id name namespace
GO:0035493 SNARE complex assembly biological_process
GO:0006906 vesicle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko04130 SNARE interactions in vesicular transport
ko04911 Insulin secretion
ko04970 Salivary secretion
ko04962 Vasopressin-regulated water reabsorption
ko04721 Synaptic vesicle cycle
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-8225 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Located in cleavage furrow and vesicle. Is expressed in blastomere; head; nervous system; and pancreatic system. Orthologous to human VAMP2 (vesicle associated membrane protein 2).

Ensembl:

ensembl_id ENSDARG00000056877

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005105 True 897 mRNA 0.49 5 22838364 22845485

Neighbor

gene id symbol gene type direction distance location
XLOC_002753 per1a coding downstream 6753 22809715 ~ 22831611 (-)
XLOC_002752 pcolcea coding downstream 34510 22789319 ~ 22803854 (-)
XLOC_002751 AL807389.3 coding downstream 86016 22752232 ~ 22752348 (-)
XLOC_002750 NA coding downstream 230649 22604273 ~ 22607715 (-)
XLOC_002749 NA coding downstream 271156 22554349 ~ 22567208 (-)
XLOC_002755 and3 coding upstream 3071 22848556 ~ 22854758 (-)
XLOC_002756 si:ch1073-143l10.2 coding upstream 61866 22907351 ~ 22912255 (-)
XLOC_002757 rnasekb coding upstream 70628 22916113 ~ 22918214 (-)
XLOC_002758 FP102052.1 coding upstream 114895 22960380 ~ 22970723 (-)
XLOC_002759 nle1 coding upstream 225256 23070741 ~ 23099869 (-)
XLOC_002748 NA non-coding downstream 303440 22530785 ~ 22534924 (-)
XLOC_002745 NA non-coding downstream 346906 22481158 ~ 22491458 (-)
XLOC_002761 NA non-coding upstream 667637 23513122 ~ 23519215 (-)
XLOC_002762 NA non-coding upstream 672576 23518061 ~ 23520243 (-)
XLOC_002763 NA non-coding upstream 703491 23548976 ~ 23549882 (-)
XLOC_002764 NA non-coding upstream 935057 23780542 ~ 24049205 (-)
XLOC_002768 CU467963.2 non-coding upstream 1537781 24383266 ~ 24383381 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G424458 NA unknown CI01000304 null 10153446 ~ 10164330 (-)