XLOC_002764


Basic Information

Item Value
gene id XLOC_002764
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23780542 ~ 24049205 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006046
CATGCAAGGTGCAGCACAGCACGTGCGAATTTCTGATTGGACTGCTGCAGCAAAGACTCGCGCGCTAGAGTGACGCGATGATGAACAACGCTTACATTCCACCATGAGACTGAACTCCAGTCCGCTGAAGTGTAATACTGGAAATAAATGCACACAGGAGTATGGCCAGCTCAACCACAAACTGGATTTGAGCTTATGAGATCATAAAGCCCGAGGTCACAGGTCATCCCACTGTTTATTCTACCCACAACGGGGAACGATGGCGCCATCATGAAAGAAAACTGCTTTAGGAACTTAAAGGAATGAATGAACCAGGAATGAAGTCGTATTGTTGCTCCAGGCTACAGTCTCCCTTCATAGTCCTCAACCAGATGATCAAAAAGGCCGTGATTTGTCTATCCCAGGTCCCAGAGATCTACATTCTTAGATTTATTGTGTGCAGCAACTTCGCCTAGAGGAGTCAAGAAGGGAAATGCGGAGGAAAGGAAGGAGAGAAAGAATGAAGCAAAGGAAGAAAACAGAATGAAATGAAGTATTTTCATTTGTCTTTTTTCTTACCTCCTTTCTGTCTTCCTTACTTCATGCCTTCCATCATTTTGTTATTTCATTCCTTCTTTCTGTC
>TCONS_00005116
GAACAACGCTTGTAAGAAAACAACACATCCGGATTAtagtttaatttataattttgagGAAAACCCACTAGAACCATGTGCATACAACGAATAAATCGACCTAATCAGACATTCCACCATGAGACTGAACTCCAGTCCGCTGAAGTGTAATACTGGAAATAAATGCACACAGGAGTATGGCCAGCTCAACCACAAACTGGATTTGAGCTTATGAGATCATAAAGCCCGAGGTCACAGGTCATCCCACTGTTTATTCTACCCACAACGGGGAACGATGGCGCCATCATGAAAGAAAACTGCTTTAGGAACTTAAAGGAATGAATGAACCAGGAATGAAGTCGTATTGTTGCTCCAGGCTACAGTCTCCCTTCATAGTCCTCAACCAGATGATCAAAAAGGCCGTGATTTGTCTATCCCAGGTCCCAGAGATCTACATTCTTAGATTTATTGTGTGCAGCAACTTCGCCTAGAGGAGTCAAGagCAATTATTGAACAAAGAGAAGCAAACTACAGGTGTGAACACCCAGTCTCCAGTCTCTGCTGAAAAGAACAAAAATATGAGCAATTGATGCGCTTCAAAATTCACTTAAATATTGAAAACCTGTGCGGATAgtatatctgaaaaaaaaaggaaagagaaaATCGCCTAATTTGGTTTGCGAACACTGTGATTCAAATCTCACAGGACTAGAACGGGCATGAATGAGCAGTTGGTAATTTCAGCCTTCAGGCTAAGCTCACCTCTGAACATCTTTCTGCAGCTTGGAAAAAGCGTCGAAAGATTTGTATCATTTAACCTTGTTGAAGTGAAAGGACACCAGCAGCAGGCTAAACGTGCGTAACAGGCAGCGAGTCG
>TCONS_00005117
GCAGCACAGCACGTGCGAATTTCTGATTGGACTGCTGCAGCAAAGACTCGCGCGCTAGAGTGACGCGATGATGAACAACGCTTGTAAGAAAACAACACATCCGGATTAtagtttaatttataattttgagGAAAACCCACTAGAACCATGTGCATACAACGAATAAATCGACCTAATCAGACATTCCACCATGAGACTGAACTCCAGTCCGCTGAAGTGTAATACTGGAAATAAATGCACACAGGAGTATGGCCAGCTCAACCACAAACTGGATTTGAGCTTATGAGATCATAAAGCCCGAGGTCACAGGTCATCCCACTGTTTATTCTACCCACAACGGGGAACGATGGCGCCATCATGAAAGAAAACTGCTTTAGGAACTTAAAGGAATGAATGAACCAGGAATGAAGTCGTATTGTTGCTCCAGGCTACAGTCTCCCTTCATAGTCCTCAACCAGATGATCAAAAAGGCCGTGATTTGTCTATCCCAGGTCCCAGAGATCTACATTCTTAGATTTATTGTGTGCAGCAACTTCGCCTAGAGGAGTCAAGTTTTCCCTGGTGAAATGCAGCGAGAGGACAAGACGGCAGTGCAAATTCCCTGGATAGGGTTGCAGAGGCGACATAAAAGAGCCTTAGATCTGGTAGCGGGGTTATTATGGGCTGTGAATCGGAATCAAAAGGCCATTTTAAAGCTGTCACATGACCCCCAGGGCCATGTCGCCACATCGCGTCGAAGACATTTCCTTCCAGCATCTTCCCTAGAGACAAGTCAAACAAGACCTCACCCAGACACACTGAGAATCTTAGACATTGGGGACGAGCGATGCAGACAGACAAGCAGAGCCTCGATGCTAGTTTAGTTTAAATGAAGAGAATGCTAAAAATGACTTCCTCTTGAAGCCGTTTGATGTGACTAGTAATGGAGTAGTTCTCAGATCTCACGACATTCTGTTGCTGTAATGGACCCCATTTTTGTAATCACTACATTAAGTAGCTCAATGGCACATTTACATGTCAGGATTTGCATACGCACGATTGGATTTACATAGATAACTGTGGATAAGTGGTCGAGGGTCACTTATTCCTCACATCAGGTTCTGACAAGGCTGTTAAACCAACGTGTCCCCCCCTTGAAAGTGAGATGTAGATTTATAAAGCCTTGTTATCTTAGACTTGTGTTCGTTCATTTAAATGCACCATGAGGGAATGGTGCTTTTTAATAAACACTAGGCACCTAGGGTTTGTTTTGCTGTCAGAAACAGATATGCATCTTGTTCAAAGAGACATAATGTTTTCTTTGGTCCTGTGCCATGGAAAACAACCATTTAACACCAAACTATTATCAGTATCTTCTGCACTAAATTAAAGGTAAACAATATtggctattaacttttttttatttataccttATGCTAATTTGCATGAATAAACAAATGTTGTGTTTCA

Function

GO:

id name namespace
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0000077 DNA damage checkpoint biological_process
GO:0031570 DNA integrity checkpoint biological_process
GO:0040033 negative regulation of translation, ncRNA-mediated biological_process
GO:0008354 germ cell migration biological_process
GO:0045974 regulation of translation, ncRNA-mediated biological_process
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0031332 RNAi effector complex cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092800

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006046 False 622 lncRNA 0.44 5 23780542 24049205
TCONS_00005116 False 856 lncRNA 0.42 5 23933778 24049123
TCONS_00005117 True 1449 lncRNA 0.42 5 24046207 24049195

Neighbor

gene id symbol gene type direction distance location
XLOC_002763 NA coding downstream 230660 23548976 ~ 23549882 (-)
XLOC_002762 NA coding downstream 260299 23518061 ~ 23520243 (-)
XLOC_002761 NA coding downstream 261327 23513122 ~ 23519215 (-)
XLOC_002760 cadm2a coding downstream 401396 23216678 ~ 23379146 (-)
XLOC_002759 nle1 coding downstream 680673 23070741 ~ 23099869 (-)
XLOC_002765 inpp5kb coding upstream 253228 24302433 ~ 24319526 (-)
XLOC_002766 pitpnab coding upstream 274546 24323751 ~ 24371312 (-)
XLOC_002767 slc43a2b coding upstream 322716 24371921 ~ 24391716 (-)
XLOC_002768 CU467963.2 coding upstream 334061 24383266 ~ 24383381 (-)
XLOC_002769 hephl1b coding upstream 344818 24394023 ~ 24416471 (-)
XLOC_002751 AL807389.3 non-coding downstream 1028194 22752232 ~ 22752348 (-)
XLOC_002750 NA non-coding downstream 1172827 22604273 ~ 22607715 (-)
XLOC_002770 AL929315.1 non-coding upstream 390415 24439620 ~ 24445992 (-)
XLOC_002771 AL929315.2 non-coding upstream 406411 24455616 ~ 24455732 (-)
XLOC_002772 NA non-coding upstream 564768 24613973 ~ 24627438 (-)
XLOC_002779 NA non-coding upstream 784491 24833696 ~ 24852525 (-)

Expression


Co-expression Network