RNA id: TCONS_00005117


Basic Information

Item Value
RNA id TCONS_00005117
length 1449
lncRNA type antisense
GC content 0.42
exon number 5
gene id XLOC_002764
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23780542 ~ 24049205 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCACAGCACGTGCGAATTTCTGATTGGACTGCTGCAGCAAAGACTCGCGCGCTAGAGTGACGCGATGATGAACAACGCTTGTAAGAAAACAACACATCCGGATTAtagtttaatttataattttgagGAAAACCCACTAGAACCATGTGCATACAACGAATAAATCGACCTAATCAGACATTCCACCATGAGACTGAACTCCAGTCCGCTGAAGTGTAATACTGGAAATAAATGCACACAGGAGTATGGCCAGCTCAACCACAAACTGGATTTGAGCTTATGAGATCATAAAGCCCGAGGTCACAGGTCATCCCACTGTTTATTCTACCCACAACGGGGAACGATGGCGCCATCATGAAAGAAAACTGCTTTAGGAACTTAAAGGAATGAATGAACCAGGAATGAAGTCGTATTGTTGCTCCAGGCTACAGTCTCCCTTCATAGTCCTCAACCAGATGATCAAAAAGGCCGTGATTTGTCTATCCCAGGTCCCAGAGATCTACATTCTTAGATTTATTGTGTGCAGCAACTTCGCCTAGAGGAGTCAAGTTTTCCCTGGTGAAATGCAGCGAGAGGACAAGACGGCAGTGCAAATTCCCTGGATAGGGTTGCAGAGGCGACATAAAAGAGCCTTAGATCTGGTAGCGGGGTTATTATGGGCTGTGAATCGGAATCAAAAGGCCATTTTAAAGCTGTCACATGACCCCCAGGGCCATGTCGCCACATCGCGTCGAAGACATTTCCTTCCAGCATCTTCCCTAGAGACAAGTCAAACAAGACCTCACCCAGACACACTGAGAATCTTAGACATTGGGGACGAGCGATGCAGACAGACAAGCAGAGCCTCGATGCTAGTTTAGTTTAAATGAAGAGAATGCTAAAAATGACTTCCTCTTGAAGCCGTTTGATGTGACTAGTAATGGAGTAGTTCTCAGATCTCACGACATTCTGTTGCTGTAATGGACCCCATTTTTGTAATCACTACATTAAGTAGCTCAATGGCACATTTACATGTCAGGATTTGCATACGCACGATTGGATTTACATAGATAACTGTGGATAAGTGGTCGAGGGTCACTTATTCCTCACATCAGGTTCTGACAAGGCTGTTAAACCAACGTGTCCCCCCCTTGAAAGTGAGATGTAGATTTATAAAGCCTTGTTATCTTAGACTTGTGTTCGTTCATTTAAATGCACCATGAGGGAATGGTGCTTTTTAATAAACACTAGGCACCTAGGGTTTGTTTTGCTGTCAGAAACAGATATGCATCTTGTTCAAAGAGACATAATGTTTTCTTTGGTCCTGTGCCATGGAAAACAACCATTTAACACCAAACTATTATCAGTATCTTCTGCACTAAATTAAAGGTAAACAATATtggctattaacttttttttatttataccttATGCTAATTTGCATGAATAAACAAATGTTGTGTTTCA

Function

GO:

id name namespace
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0000077 DNA damage checkpoint biological_process
GO:0031570 DNA integrity checkpoint biological_process
GO:0040033 negative regulation of translation, ncRNA-mediated biological_process
GO:0008354 germ cell migration biological_process
GO:0045974 regulation of translation, ncRNA-mediated biological_process
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0031332 RNAi effector complex cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000154663

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006045 lncRNA downstream 496325 23548976 ~ 23549882 (-) True XLOC_002763
TCONS_00006044 lncRNA downstream 525964 23518061 ~ 23520243 (-) True XLOC_002762
TCONS_00006043 lncRNA downstream 526992 23513122 ~ 23519215 (-) True XLOC_002761
TCONS_00006042 lncRNA downstream 1134533 22907397 ~ 22911674 (-) True XLOC_002756
TCONS_00006041 lncRNA downstream 1438492 22604273 ~ 22607715 (-) True XLOC_002750
TCONS_00005132 lncRNA upstream 390425 24439620 ~ 24445992 (-) True XLOC_002770
TCONS_00006047 lncRNA upstream 564778 24613973 ~ 24627438 (-) True XLOC_002772
TCONS_00005145 lncRNA upstream 703489 24752684 ~ 24759574 (-) True XLOC_002776
TCONS_00005759 lncRNA upstream 784501 24833696 ~ 24835335 (-) False XLOC_002779
TCONS_00006048 lncRNA upstream 785179 24834374 ~ 24852525 (-) True XLOC_002779
TCONS_00005114 mRNA downstream 667061 23216678 ~ 23379146 (-) False XLOC_002760
TCONS_00005115 mRNA downstream 687850 23220501 ~ 23358357 (-) True XLOC_002760
TCONS_00005112 mRNA downstream 946338 23070752 ~ 23099869 (-) False XLOC_002759
TCONS_00005113 mRNA downstream 946356 23071274 ~ 23099851 (-) True XLOC_002759
TCONS_00005111 mRNA downstream 946398 23070741 ~ 23099809 (-) False XLOC_002759
TCONS_00005118 mRNA upstream 253238 24302433 ~ 24317274 (-) False XLOC_002765
TCONS_00005120 mRNA upstream 253238 24302433 ~ 24318538 (-) False XLOC_002765
TCONS_00005119 mRNA upstream 253238 24302433 ~ 24318538 (-) False XLOC_002765
TCONS_00005121 mRNA upstream 255339 24304534 ~ 24319526 (-) True XLOC_002765
TCONS_00005122 mRNA upstream 274556 24323751 ~ 24371312 (-) False XLOC_002766
TCONS_00005104 other downstream 1214778 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 1293859 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005092 other downstream 1774304 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 2139102 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 2472801 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005129 other upstream 328222 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005130 other upstream 334071 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005133 other upstream 406421 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005164 other upstream 1444978 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 2083274 26132469 ~ 26141081 (-) False XLOC_002799

Expression Profile

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