XLOC_002778 (si:ch1073-15f19.2)


Basic Information

Item Value
gene id XLOC_002778
gene name si:ch1073-15f19.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24778289 ~ 24784446 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005147
ctggagcagCAGCGGTGCTACTGACAGCAAAACAACAACTAAATCTGATCCCATCCTCACCAGCACTTCAAAACCAAATACTACTGTGACAAACACACAACCCCGAAACACCATCCATCACACTGCTCTCACTGGCAGCTCTTTAGCACCAGCTGCTGACACTGCATCAACATTACATACAAGCGCTGTACAGTCCACAAACACCACTcatacaaacaaaacaagcaCAAGTCCAGATCCAGAGACCAGCAGAATAACAGTCCCCTCTGTTACGACACAGAAAGACAGCACCACCACAGGCTCGAAAAGCAAAGCATTTGTGGCTGTTCCGATTGTGTTAATTTTACTCGTGCTCATTGTGCTTCTCTATGGAAGATACCGGAACCAGAAAAAaaTGGATAGGCCACCCCCATTCAAACCTCCCCCACCACCAGTGAAATACACATCAGTGAGGAACCCTGATATCCGCATGACTGATATTCTTGTCTGAATGCATCATTCACTTTAGTACTCGCAGACCGTGGGCCACAAAAAGACTGACTGGAGGACTTTTCTGTTAAGACTGCAACTCTGTCATTCATTACTCATCCTCTTGTTGTTCCAAACCTCTCAGACTTTCGTTCAAAACACAGATCTtcaaaagatatttttaatgaaaCCTGACAGACGTTAGTTTCTCCATTGAAAGTCCACACAAACCTAACCTTTGATGCTTCTAAAAGTCTTCAGAAGAGATGATTGCTTTATAGGatgaatttgttttaatttcagctTGTATTCATCAAgctagtaatattttaatttaaggaccaattcccactattaactacttgttaagatattggctgtttatagTACTTTTAAAGTTTGCTagtattctacatccctaatcctgccCAATATCTAAATCCTACTATCTTACTGTCTATTAATAAGCAGGAAGCTAATACTTTATTGAGCTTAAAGTCATCTTAAGTCTTGTTTATATTGTTTAgtaatagcaagaattgtaccaTAAAATAAACTTTGACCAATCAACTGATATCagttacagtgcatctggaaagtagcGCTTtagtttttccatatttttaatgttacagccttattccaaaatgtattaaattcatttattttatcaagattctacacacaaaaccccataatgacaatgtgaaaaaatattttttgaaattgttgcaaatttattaaaaataaaaaacctgaaaattca

Function

symbol description
si:ch1073-15f19.2 Predicted to be involved in cell-matrix adhesion and inflammatory response. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-84 Predicted to be involved in cell-matrix adhesion and inflammatory response. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000095640

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005147 True 1234 mRNA 0.37 3 24778289 24784446

Neighbor

gene id symbol gene type direction distance location
XLOC_002777 timm10b coding downstream 12301 24762216 ~ 24765988 (-)
XLOC_002776 smpd1 coding downstream 18673 24709967 ~ 24759616 (-)
XLOC_002775 si:ch211-287a12.9 coding downstream 88564 24682307 ~ 24689725 (-)
XLOC_002774 proser1 coding downstream 118449 24648903 ~ 24659840 (-)
XLOC_002773 stoml3b coding downstream 130058 24641229 ~ 24648231 (-)
XLOC_002779 NA coding upstream 49250 24833696 ~ 24852525 (-)
XLOC_002780 CABZ01058107.1 coding upstream 81089 24865535 ~ 24868581 (-)
XLOC_002781 si:ch211-214k5.3 coding upstream 151319 24935765 ~ 24937070 (-)
XLOC_002782 si:ch211-214k5.3 coding upstream 174800 24959246 ~ 24961310 (-)
XLOC_002783 cd209 coding upstream 187027 24971473 ~ 25028527 (-)
XLOC_002772 NA non-coding downstream 150851 24613973 ~ 24627438 (-)
XLOC_002771 AL929315.2 non-coding downstream 322557 24455616 ~ 24455732 (-)
XLOC_002770 AL929315.1 non-coding downstream 332297 24439620 ~ 24445992 (-)
XLOC_002768 CU467963.2 non-coding downstream 394908 24383266 ~ 24383381 (-)
XLOC_002764 NA non-coding downstream 729084 23780542 ~ 24049205 (-)
XLOC_002788 NA non-coding upstream 596552 25380998 ~ 25390673 (-)
XLOC_002790 NA non-coding upstream 709727 25494173 ~ 25499474 (-)
XLOC_002792 NA non-coding upstream 902455 25686901 ~ 25687218 (-)
XLOC_002793 NA non-coding upstream 906426 25690872 ~ 25691670 (-)

Expression


Co-expression Network