G873432


Basic Information

Item Value
gene id G873432
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 27554301 ~ 27555211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU994370
ggcatattgctgtggtagccatgatggttaagtgtgccttgaattctaaataaatcacagactgtgtcagcagcaaagcactcccacatcatcacacctcctcctccatgcttcacggtgggaagcacatgtggagatcatccattcacctactctgcgtctcacaaagacacagcagttggaatcaaacatctcaaatttggactcatcagaccaaaggacagatttccaccggcctaatatccattgctcgtgtttcttggcccaagtaagtctcttcttattattggtgtccttttactagtgaatattatttttttcagcaatttgaccataaaggcctgattacacgcagtctcctctgaacagttgctgttgagatgtgtcggttacttgaactctgaagcatttatttgtgctgcaatttctgaggctggtaactctaatgaacttatcctctgcagcagagctaactccTGGTCTTCCTTACCTgtagtggtcctcatgagagccagtttcatcatagtgtttgatggtttttgcaactgcacttgaagaaacattcaaagttcttgacattttccagattgactgaccttcatgtcttaaaataatgatggactgtcatttctctttgcttatttgagctgttcttgccataatatgtacttgggcttataccaaatagggctatcttctgtataccacccctaccttgtcacaacacaactgattggctcaaacgcattaagaaggaaagaaattccacaaattaactttaacaaggcacacctgttaattgaaattcattccaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcaaaggcaaagggtggctactttgaagaatctcaaatataaaac

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU994370 True 911 lncRNA 0.41 1 27554301 27555211

Neighbor

gene id symbol gene type direction distance location
LOC110534878 trim37 coding downstream 14652 27499594 ~ 27539649 (-)
LOC110533580 tex14 coding downstream 187745 27330589 ~ 27366556 (-)
LOC110533583 LOC100196673 coding downstream 242479 27305871 ~ 27311822 (-)
LOC110533581 gas2l2 coding downstream 248740 27289957 ~ 27305561 (-)
pex12 pex12 coding downstream 375614 27174930 ~ 27178687 (-)
kctd7 LOC106603469 coding upstream 19416 27574627 ~ 27578300 (-)
LOC118936908 LOC106567662 coding upstream 34562 27589773 ~ 27592690 (-)
LOC110533589 LOC106603469 coding upstream 68841 27624052 ~ 27633778 (-)
cux1a LOC106603419 coding upstream 101851 27657062 ~ 27870154 (-)
LOC110533591 LOC106603471 coding upstream 334277 27889488 ~ 27969015 (-)
G873431 NA non-coding downstream 1461 27552618 ~ 27552840 (-)
G873409 NA non-coding downstream 54909 27497463 ~ 27499392 (-)
G873346 NA non-coding downstream 145101 27408770 ~ 27409200 (-)
G873281 NA non-coding downstream 178044 27318532 ~ 27376257 (-)
LOC110533586 rabgef1 non-coding upstream 7704 27544054 ~ 27563122 (-)
G873436 NA non-coding upstream 10960 27566171 ~ 27566517 (-)
G873437 NA non-coding upstream 11887 27567098 ~ 27567387 (-)
G873775 NA non-coding upstream 15420 27570631 ~ 27570934 (-)
G873781 NA non-coding upstream 23891 27579102 ~ 27579626 (-)
G873209 orai2 other downstream 389751 27162900 ~ 27164550 (-)
LOC110533569 LOC106567674 other downstream 642675 26890009 ~ 26911668 (-)
G866654 NA other downstream 5730680 21819111 ~ 21823621 (-)
G865988 LOC106578276 other downstream 5794449 21759124 ~ 21759852 (-)
G873784 LOC106573797 other upstream 27718 27582929 ~ 27584262 (-)
G874706 NA other upstream 985018 28540229 ~ 28543267 (-)
G875194 NA other upstream 1386029 28941240 ~ 28985070 (-)
LOC110533621 NA other upstream 2360156 29906094 ~ 29922728 (-)
G878962 NA other upstream 3892271 31447482 ~ 31449163 (-)

Expression


Co-expression Network