XLOC_002786 (kpna7)


Basic Information

Item Value
gene id XLOC_002786
gene name kpna7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25214270 ~ 25217347 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005155
GTGGAGCTGTTTTGTATACAATCTTGCGCTGTCGGCTCTGTTTTATCACTTATTGTAACGTTtgatcttaaaatatttttttctgaaagtttatTAAGTGTATTTTGTGTCAGCTACAGCACTGAGATTCAAAATGCCTACAGAAAATCTTTCAGATAAACGCATGTCCAAGTTCAAAAATAAGGGCAAGGAGCCGACGAAACTGCGTGACCGCAGAGTTGCGGAGTGTGTTGAGCTTCGTAAAGCTCAAAGGGTTGAGGGTATCATGAAGAGAAGAAATATTACATCCTTGGGAGATGAAGAACCTCTCTCACCAGAGTTTAACACGGACAATGAACAGGTCATCTGTACAACAATTGAAGAAATTGTTGCAAACGTGAACACTGACTGCCCAGAGAAGCAGAGGAACGGTTGTCAAGCAGCAAGAAAGCTGCTTTCTCGGGAAAGGAACCCTCCCCTGAAAGAGATCATTGAGGCAGGACTTCTGACCCGCTTTGTGGAGTTTCTAGGCAGGAACGATGACCCCACGCTGCAGTTTGAGGCTGCTTGGTCGCTCACTAATGTTGCATCTGGCACCTCCTGGCACACACAGCAGGTGGTAGAGCACGGTGCGGTGCCAGCCTTCATCGCACTGCTGGCTTCACCATTGCTGAACATCAGTGAACAGGCTGTCTGGGCTTTAGGCAACATTGCAGGTGATGGTTCCTCCTATAGAGATGCCTTGATTGACTGTGGGGTAATCCCTGCGCTGTTGGCACGGCTCACTCCAGATGCTCCAGTGGGATACCTTCGCAATCTCACATGGACCCTGTCGAACCTTTGTAGGAACAAGAATCCCTTTCCCCGTTTCAGTGCTGTCCAACAAATGCTCCCCTCTATTATTCAATTACTCCATCACAGTGACAAATCCATCCTGTCTGATGCATGCTGGGCCATTTCATACCTGACTGATGGACCAAATGAGCGAATTGATGTGATCATCAAGGCTGGAATCCTCACACGGTTGGTTGAACTCTTGGGCTTTGAGGAACTTGCTGTAGTGACTCCAGCACTACGTTCGATTGGGAACATTGTTAGTGGCTCAGACCTGCAGACGCAAGCGGCCATtgatgcaggtgtgttgagtGCTTTGCCCAAGCTGATGCGGCATCAGAAGTCCAGTGTTCAGAAGGAGGCAGCTTGGGCAGTGTCCAACATTGCAGCTGGACCCTGCCAACAGATCCAACAGCTCATCACGTGTGGATTGTTGGCTCCACTAGTGGATCTACTAAGGAATggTGACTTCAAAACCCAACGTGAGGCAGTGTGGGCAGTGACTAACTACACAAGCGGTGGGACTGTAGAGCAAGTCGTTCATCTGGTCAAGTGTGGTGCTTTAGAGGCCATTTTGAACTTACTGCAAGTTAAAGACACCAAGACGGTCTTGGTCATCTTGGATGCCATCAGTAACATTTTCCTGGCTGCCGAGAAACTAGGGGAGGTGGATAAGCTTTGTTTGTTGGTGGAGGAAGTGGGAGGGCTGGATCGAATCGAGTTTCTTCAGAACCATGAGAACAATGCTGTTTATAGAGCGGCTCAAGCTCTAATTGAGAAGTATTTCAGTGAGGATGGTGAAGATCAGTGCCTGACAACTGAAGCCACAGATGCAAACTTTGTCTTTGGAGCATCTGACGTCCAAAAGAGATTTGAtttttgatttcttttaaaatgattgcatttaataaatagatatttttgc

Function

symbol description
kpna7 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA7 (karyopherin subunit alpha 7).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2023 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA7 (karyopherin subunit alpha 7).

Ensembl:

ensembl_id ENSDARG00000027169

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005155 True 1738 mRNA 0.47 10 25214270 25217347

Neighbor

gene id symbol gene type direction distance location
XLOC_002785 fat3b coding downstream 10236 25108853 ~ 25204034 (-)
XLOC_002784 mtnr1bb coding downstream 145063 25035459 ~ 25069207 (-)
XLOC_002783 cd209 coding downstream 185743 24971473 ~ 25028527 (-)
XLOC_002782 si:ch211-214k5.3 coding downstream 252960 24959246 ~ 24961310 (-)
XLOC_002781 si:ch211-214k5.3 coding downstream 277200 24935765 ~ 24937070 (-)
XLOC_002787 tmem135 coding upstream 94990 25312337 ~ 25343521 (-)
XLOC_002788 NA coding upstream 163651 25380998 ~ 25390673 (-)
XLOC_002789 grik1a coding upstream 185116 25402463 ~ 25570647 (-)
XLOC_002790 NA coding upstream 276826 25494173 ~ 25499474 (-)
XLOC_002791 tiam1a coding upstream 355025 25572372 ~ 25657506 (-)
XLOC_002779 NA non-coding downstream 361745 24833696 ~ 24852525 (-)
XLOC_002772 NA non-coding downstream 586832 24613973 ~ 24627438 (-)
XLOC_002771 AL929315.2 non-coding downstream 758538 24455616 ~ 24455732 (-)
XLOC_002770 AL929315.1 non-coding downstream 768278 24439620 ~ 24445992 (-)
XLOC_002768 CU467963.2 non-coding downstream 830889 24383266 ~ 24383381 (-)
XLOC_002792 NA non-coding upstream 469554 25686901 ~ 25687218 (-)
XLOC_002793 NA non-coding upstream 473525 25690872 ~ 25691670 (-)
XLOC_002802 NA non-coding upstream 1223705 26441052 ~ 26447171 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_11575414_11578638 NA coding CI01000304 null 11575328 ~ 11578638 (-)