XLOC_028371 (mrps10)


Basic Information

Item Value
gene id XLOC_028371
gene name mrps10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 325028 ~ 330748 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055105
GACGACACTTCCGGCTCAGTGGAGACAGAAAACATGGCGGCCTCCATGGCGAATTTTAGAACCCTTCGCGTCCTGTCAAAGATCTTTCACGGACACTTCACAGCGGCTTCAGCAGTCCAGCATCACACAGCGTGTCCACGgctGGTCCACATCGCGTCCGTCTTCTCACCACCGTCTCCAGCTATCACGGAGAGCGAGGAGCCGGACACGCTCTACCAGCGGCTCTCAGTGCAGGTCAAAGGTCACGATAGAGCCGTGCTCGACAGTTACGAGTTCTTCGCCACGCTGGCCGCCAAAGAGCTCGGCCTCAGCCTGGAGAAAGTATTTGAGCCGCCGAAACACATCGATAAGCTGACGCTGCTGAAGTCTAGGCACATCTTCAAGAAGCACCGCGTGCAGTACGAGATGAGGACGCATTACAGGTGCATCCAGATCTCCAGGATAACCGGCTCGAGCGCACGCGTTTATCTGGAGTATATTCAGCGCAATCTGCCTGAAGGAGTTGCTATGGAGGTCACAAAGACTGCCATGGAGAAAATCCCAGAACACATCCAGAAACCCCTGTGGGACGACAACAAACCAGAGGCGTCCGGATAATGAGGATTTAGCCCAATATGAACTCAGACGCCTGTGAATATTGTGCATCAAGGAGAAACAATATGTCCTCATGTCCACTTAAAAGCAGATTTCAATATAACCTATGACTGTGttaagtgtgtgtgcatttacACCAATAAACATGTGCATTTCTATA
>TCONS_00055106
GGCGGCCTCCATGGCGAATTTTAGAACCCTTCGCGTCCTGTCAAAGATCTTTCACGGACACTTCACAGCGGCTTCAGCAGTCCAGCATCACACAGCGTGTCCACGtctgtctgtctgtctatctatctatctatctatctatctagtctgtctgtctgtctgtctgtctgtctgtctatctatctagtcTGTCTGTCTATAGGAAAATACCATAATTCATAGCTCCGAATAgtgatagataaaaaaaaatgtatatgcaaAATGCTTATGGGGGGGTTAAAAAACAGGCAGGGGTGATATAAAAGTTAATAATGAATTGAATTTAGGTAAGCTATGCTAATaacacatcattaaaaaaaacataacctTATATTCTGTGCTCAACATGCAAGATTATAAGTGTATGGCATCAGTCAAAACAATGTtgtcttaacaataaataaacagaaaagacCTTGGattcatgaattaaaaaaaaacttgaccggaaatgtaaataaacagataCTGAAGTGTTAAAACTGCATGTgatgtggtgtttgtgtgtgtg

Function

symbol description
mrps10 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Predicted to be active in mitochondrion. Is expressed in visceral fat. Orthologous to human MRPS10 (mitochondrial ribosomal protein S10).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040914-39 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Predicted to be active in mitochondrion. Is expressed in visceral fat. Orthologous to human MRPS10 (mitochondrial ribosomal protein S10).

Ensembl:

ensembl_id ENSDARG00000045913

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055105 False 754 mRNA 0.51 7 325028 330748
TCONS_00055106 True 550 lncRNA 0.37 3 329771 330713

Neighbor

gene id symbol gene type direction distance location
XLOC_028370 echdc3 coding downstream 37603 286425 ~ 287425 (-)
XLOC_028369 si:ch73-252i11.1 coding downstream 47947 269443 ~ 277081 (-)
XLOC_028368 RERG coding downstream 84291 233812 ~ 240737 (-)
XLOC_028367 ptpro coding downstream 113314 190547 ~ 211714 (-)
XLOC_028366 ptpro coding downstream 131266 184863 ~ 193762 (-)
XLOC_028372 dynlt1 coding upstream 55687 386435 ~ 390442 (-)
XLOC_028373 NA coding upstream 62803 393551 ~ 396819 (-)
XLOC_028374 rtcb coding upstream 345962 676710 ~ 685433 (-)
XLOC_028375 CU855889.2 coding upstream 370864 701612 ~ 734347 (-)
XLOC_028376 NA coding upstream 393082 723830 ~ 732484 (-)
XLOC_028362 NA non-coding downstream 205834 116322 ~ 119194 (-)
XLOC_028360 NA non-coding downstream 223651 99991 ~ 101377 (-)
XLOC_028359 NA non-coding downstream 250420 73430 ~ 74608 (-)
XLOC_028358 NA non-coding downstream 252370 71463 ~ 72658 (-)
XLOC_028357 NA non-coding downstream 260325 56025 ~ 64703 (-)
XLOC_028383 NA non-coding upstream 569214 899962 ~ 904022 (-)
XLOC_028385 NA non-coding upstream 589004 919752 ~ 921761 (-)

Expression


Co-expression Network