XLOC_028408


Basic Information

Item Value
gene id XLOC_028408
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1915786 ~ 1979057 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057308
GACCCTGAGccttcctccaacaacttttgaaATAGAAAAGATTAAAAAAGTGACTAATATTTTTATACCATTATGTCAAGTTTAGGCTTTGTAGGTGTTTCACATTTAATATCTTACTCGTGTAACAGTTTTGGCACTTTATATGACTTTATGTTTTACCAAACCAACAGTAAAATAATTGTGCTTATAAAATATCGTCACACATATGATTTAAAACCttcatgtgtgtttatttgtgtgtgttttttctcctGTAAGGTGAAGTGAGTGTAAATGATGGAAATATCTGTGACGTTCCTCCTTGCTGGATGTCTGATACAAGgTGTTTTATGTGGCTTCAGTATCAGTCTGCTGGAGAGAGTAGAAGCTCTAAAGGATCCTGTGTTTATATACCCTGCACATTCAATATTGATGAAGATTATAAAGATGACCTCACTGATACTGCAAAGAGATTATGGTATAAAGATGGAAAACCTGCAGTTTTGGTGTTTGACTCCAGCAGCCCTGACAGTGGACTCTTAACAGGAGAAATATTTGGCAAACCTACAGATAAAAGGTGCAGCACTCGCTTCTATAATCTCAAACTAACAGACAGTGGCTCAT
>TCONS_00057985
GTTCATTCAATCAACAGTTTGAAACCGGCAGCTCAACAGCACCGAGAGACACCGTGTGTTTGTGCTGTCAGGTGTGTGTGCGTTTGCAGGATGGAGTCGGACTGTGGCGTATTCTTCAGTCAGTGTGGAGAGTCCTCTGATTTCTCCTGACGGCGGCTCCGTGTTGGTGAAGTCAATGGAGGAGTAATGAAGAGTTTCCGATGTGGGCAACAGCAAGCGTttatcagcacacacacactgaccattAGACGTGACGGCCTGACGAAGAAGAAAAACAACACAATCACAGCTGATCGACGTCTTTTGAGGACTAATAATACGGTCAGAACACAGAAGATCAGGATGAGCGATGCTCCGATGGCGAATCCCAGCAGCACACATCCAGTATGAAGACCTGGAAAACAGAAAGACGGTCAGAACACAGAAGATCAGGACGAGTGATGCTCCTACAGAAAATCCCAGCAGCAAACATGCAGGATGGAGACCTGGAAAACAGAGAAAGAAGGTCAACACAACCTTATGTGGAAACAACAAACTTACTGTACAAGCTGAATCAGACACTCGACTGCAGGTGAAGTGAGTGTAAATGATGGAAATATCTGTGA
>TCONS_00057986
GTACACTTGACCACCCCTGTAACGGTTTATACCATTGTGAACGCGCACCCGCGCCACTATGCGAGAAGACGTTCATTCAATCAACAGTTTGAAACCGGCAGCTCAACAGCACCGAGAGACACCGTGTGTGTGCGTTTGCAGGATGGAGTCGGACTGTGGCGTATTCTTCAGTCAGTGTGGAGAGTCCTCTGATTTCTCCTGACGGCGGCTCCGTGTTGGTGAAGTCAATGGAGGAGTAATGAAGAGTTTCCGATGTGGGCAACAGCAAGCGTttatcagcacacacacactgaccattAGACGTGACGGCCTGACGAAGAAGAAAAACAACACAATCACAGCTGATCGACGTCTTTTGAGGACTAATAATACGGTCAGAACACAGAAGATCAGGACGAGTGATGCTCCTACAGAAAATCCCAGCAGCAAACATGCAGGATGGAGACCTGGAAAACAGAGAAAGAAGGTCAACACAACCTTATGTGGAAACAACAAACTTACTGTACAAGCTGA
>TCONS_00057987
GGACCTGAAGCAGCACTTAATTTCAGACAGGTGTGTtcggtcagggttgcaactgaaatctacaggaaggtagaCCTCCATTAACAGAGTTGCTGACCCCTCTTATAGATTAACACTAAAATAGCTGAAGTGAAATAGATTTTAACTTCATATAAATACAACAACTCACGCTTTGCGTCAGAATGAGTCCAGATGTGTCGTCTCGAGTGCTTTCGACGGTCAGAACACAGAAGATCAGGATGAGCGATGCTCCGATGGCGAATCCCAGCAGCACACATCCAGTATGAAGACCTGGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057308 False 603 lncRNA 0.36 2 1915786 1916566
TCONS_00057985 False 605 lncRNA 0.48 5 1916275 1978987
TCONS_00057986 False 513 lncRNA 0.49 3 1942033 1979057
TCONS_00057987 True 297 lncRNA 0.45 2 1974147 1975064

Neighbor

gene id symbol gene type direction distance location
XLOC_028407 ano6 coding downstream 1558 1878573 ~ 1914228 (-)
XLOC_028406 NA coding downstream 60015 1848660 ~ 1855771 (-)
XLOC_028405 pwp1 coding downstream 76434 1825839 ~ 1839352 (-)
XLOC_028404 mrpl42 coding downstream 90950 1821637 ~ 1824836 (-)
XLOC_028403 ube2nb coding downstream 97471 1809562 ~ 1818315 (-)
XLOC_028410 FAR2 coding upstream 9403 1988460 ~ 2036620 (-)
XLOC_028411 cpsf6 coding upstream 62010 2041067 ~ 2059302 (-)
XLOC_028412 kcnc2 coding upstream 81467 2060524 ~ 2196928 (-)
XLOC_028413 si:ch73-278m9.1 coding upstream 231260 2210317 ~ 2219705 (-)
XLOC_028414 krr1 coding upstream 279878 2258935 ~ 2265271 (-)
XLOC_028393 NA non-coding downstream 656045 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 681550 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 879740 1028836 ~ 1036046 (-)
XLOC_028391 NA non-coding downstream 892086 1022316 ~ 1023700 (-)
XLOC_028417 NA non-coding upstream 413015 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 466700 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 685111 2664168 ~ 2666870 (-)
XLOC_028427 NA non-coding upstream 1271717 3250774 ~ 3257564 (-)
XLOC_028428 NA non-coding upstream 1327088 3306145 ~ 3308415 (-)

Expression


Co-expression Network