XLOC_028411 (cpsf6)


Basic Information

Item Value
gene id XLOC_028411
gene name cpsf6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2041067 ~ 2059302 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055160
ATGGCGGACGGTGTTGACCACATCGATATTTACGCGGATGTAGAAGAAGAATTTAACCAGGAGTCGGATTATCCTGTTCATGACCAGATTGACCTGTATGACGATGTCATCTCGCCATCTGCCAACAACGGGGACGCACCCGAGGACCGAGATTACCTGGATTCCCTTCCTGCACCTGGAGGCAACGAGGGCTCCAAAGGGGCTCCAGCTAATGTCGTCTACACCTACAATGGCAAACGGATCGCTCTGTACATCGGAAACCTCACATGGtgGACCACTGATGAAGATTTAACAGATGCCATTCGCTCAATAGGCATCAATGATGTGCTGGAGATCAAGTTTTTTGAGAACAGAGCAAATGGCCAGTCTAAAGGGTTTGCTCTGGTCTGCGTGGGATCAGATTCCTCTTCCAGGAAGCTCATGGATCTGTTGTCTAAACGGGAGCTGCATGGACAAAACCCCATCGTCACCCCTTGCAACAAACAGTCTCTCAGTCAGTTCGAGATGCAGTCACGAAAAAGTGAGCGCAGAGGATTCGACAATTCACATTATCATAAAGGCACACAGTCAGGACAGATGTCAGGAGAGGGGAAGGCTGGTCCTCCAGGCTCAGGATCTCGAGGTGGAGGATTCCCTCCTGGCAAAGGTCAGAGACGCTTTCCTGGCCCACCTGGACAAGGAGACCGCTTCCCTGGACCGGTTGGACCTGGCGGTCCTCCACCACACTTCCCAGGTATGCAGGGCCCACCACGTCTTCCCTCTGGCCCACCTGGGCCCCTGGGACCTCCAGGCCCCCCTCCACCTGGACAAGGTCTGCCTCCTCCCCTCGGCGGACCCCCTAACAGAGGAGACCGTCCTCCTCCACCTGTCTTGTTTCCTGGTCAGTTCGGGCAACCCCCAATGGGCCCGATGCCTCCTGGGCCTCCCCCACCAGGATACGGGCCTCCCCCAGGCCCCCCTCCACCTCAGCAGGGACCACCCCCTCCAGGACCCTTCCCTCCCCGTCCACCTGGGCCCTTAGGACCCCCGCTTGGCCTCGCACCCCCACCACACATGCAGGGACCCCCACCTGGAGGCCCACCGCCGGCTCCTCACGTCAACCCGGCCTTCTTCCCACCACCTGGAAACAACATGCCATCATCTGACGGCAGAGGACCCCCACCTGGAGACCCGTACGGCCGCCCACCTCCTTATGACAGAGACTTCCCTGGTGGCAGGGACATGGATGCGTCTCGCACTCCCCTGAGCGAAGCTGAGTTTGAGGAGATCATGAACCGGAACAGAGCGATTTCCAGCAGCGCTATTTCAAGGGCCGTTTCTGATGCCAGTGCAGCTGATTACGGCAGTGCTATAGAGACTCTGGTGACGGCCATCTCTCTGATCAAGCAGTCGAAGGTTTCTGCTGACGACCGCTGCAAAGTTCTCATCAGCTCACTGCAGGACTGCTTGCATGGAATCGAGTCCAAATCGTATGGCTCTGTGGCAGGTGCCATGGCAGATTTAAATCAGGGACACAATGGATTTTACCGACGGGAGCGGTCCAGGGAGAGAGATCACAGTCGCTCTCGTGAGAAGAGCCGCCGGCACAAATCTCGCAGTCGAGACCGGCATGAGGATTACTACCGGGAGCGCAGCCGAGAGAGAGACCGCCATCGTGAGCGAGACAGAGACCGCGAGAGAGACAGAGAACGCGAGAGGGAATATCGCCACCGTTAATAGGAGAAGAAGCTGAAcgcaagaggaggaggaggagacgcCAGGAGCAACGAGGATTCatcgcgcacacacaaacaccgtCACGGAGAGCGCCGGACTCCGGACACACTAAAAAAAGTAGAGTTCTGTACAATACTATATACTCACTCTCTTAATTCCCTGCAGCtctttttattttgtacttttatttggAAGTAGCTGTGTGCTTAAGTCAGTTCAGCTTGTTTTGGCCAAGGAAGTGAATTATTTGCCTGCtcgttcaaaaaaagaaaaaaatacacacacacaactttcCGACTGCTATAATGTTGTAAATTGTCAGTTAGCTAGATTTGTTTTTATAGGATCCTTTCTTTCGTTTCGTGTTTCTTCCCTCATTTCCCCCCCTTCCCATTATCCATATAATGTTTGTAAGTGTCTTTTGGCTTGATTATTAAATAGAATCTGTGTTGTAATAAAGTGTGTACTGTTTATACTTGATTTATTTAGTCAACTGGCTTAATATGCTTTATTTATTGTACAaaaatgcacttttttatttatttatttcacttagGAAGCACATTTTGactacttttgtttatttttttaattacgagCTATATATTCTGTGCCTTTTTATGGTTTACAAAATTTTAAGTGGTTCATGTAATGTATAACGAACACCATTTATGGATAGATTgtgtaaatcttttattttaacctCAAATTCTTGTAGGtttcttgttttaaataatttctgaatGGTTCTCTTGATTGTAATTGCATCTACTGCTTTCAAATCTGTGAAATGCTACTTTATTTTCCCCAAATTCAGCCTTTTTTGAAGTGATTATTAATGGTTCATAAATAACATCTGATGCATATTTTTTGCATTTGTAAAATATGCACATTTCCAttgttttgagtgtgtgtatatatatacgtTCAGGCCATATTATGTTTGATTCTGCTAAATTTAGAAGcttttaaaatgctacattttcacattgattgtgtatatatatttttagtatgtGTGCATCACTTGTAAAAAGGATATAGTGCTCATTTTTCTACATGCAACAGTTGATTAAGCAAGAAATAAGTGCATCAATGCTTTAATGTAAATAGTGAGGCGTTTTATTTTGAAACTGAGATTTGAGCGATGCATTTGAACACATTCCTGACTGCTCTGTCAGTTTTCATCTCTCTGCGTGGAAAGTTGATGTAAATTCATGAGTTTCTCATTTAAAGCCTGTGGGTTTTGGCTTGTTTGACGGTTTATTAATGTAATCGGGGCAATGTTGAAATTATTCAAGTGGTTCTTGCAACCACTCAGTAGTGAAGTGGACAAACAGCTTCATTCTGGGTTCCTGTTTCACACCCATAGTCATCTGGACTGAGAGGTAAGTCCATTTTGTCTTGAATATAAAGCTAGATGTGTGTCTGCAAACAGTAACAGCTCTATTAATTGACATTTGAACTGTTGCATTGTTCTGCATTGTCCTTGAGGGTCAGTCCACATGTATAATTAATTGCACTTGATTGGGATGGACTACATGTAATATACTCATTTACAATTTTTAGACTATTTTTGCCAATTAATAAACTTTTCTTCACTAGATTGGTCTTGTTTCATTGTTTTAGTGCGTGGAACTACAAAAGCCTAAATGAGTAAGATAGTAGATTTAGAGCGGTCACGTATACTgatgattttaatattttcaatgcATTAACTGCTTTCAGTAAAGCTGAGGGAAGTTTCCTGTTGAAATATAAAGTGGCTGTTCTATAAAATGTCACAACAGTAATTTTGGTTTATACTttaataaggtttcattaatgcatttactgacaacaatacatttattaaagtatcTACTTGCTCTGgctaaatgtgaataaaaaattaagtaattcattGTTAACTCGCGGTGCTTGAACTGTTAACAAGtgaaactttacattttaatgcattaataaggGTCATAGTAAACTCGTGGTggctaattaattttagtaaattaatgaaattattgTAATACGTCACCATAATgtaattttacatatataaagcTTTAAATGCAATGATGGTGAATAAAGTTGAAAGTTTCAAGAACTTATTAAAAAGATTAGTTATTATGCAATTTTATTGTAGCACCAATTACCATTATTAAAGGCTTATTATACCCTAACTTATGCATTAACGTCTTCTATATCCGACCCAAGGAACAAATTAGTAGTTCTTTGAGCTAAAAATCTTGATTAATGCCTAAATTGCTTTATATCTTAAAATAGTGACCTCTTTCTGACATGAGATCAACAAATGTTGATGcacaatttatattaaattaatagaaAGCCTTAAGACTTCGGAGGGGTATATTGTAATATTTAGGCGATATTTTAAGTCATCAGATCTTTCTAGCACAATTTATATTCTTGTAGTCAATATATAAgttgcttgttttaataaatgacGCATTAAATCTTCAGTAATTAATGGTGAAATGTATgacgggagtttttttttttttttttaataaaaaaaaaaatgaatcacgtCTCTCTATTATATTGGTTTTAGAGCTGAACATCACATCTTTGACCTGTTGCTGTAGATAAGAGGTGAATGGGCAGATGAGGGCgctattttaaaattatagaGACTCATGCAACGACATTATTTGACCAGCAGAGGGCAGAGTGTCAAAGAAAGTCACCTTGTCCTAAAGCAGAGCTGCAACATTTTCTTAAAAAGGCCGGAGGTCAATTTAGCAAACTATTGCATTAAAGTTGCCATAACTtcctaatttaattaaatacttgAACATAAATAGCAAAAATTACTTAAATTGTATTGCCTAATGCATTTCTATTCACATCTCATAATGCGTTtattacaacaataaaaaataataatgtataacacaatggagttcaggGCTATGCCGTTGTCAATGTCGTGTGAATTGTTATCTGTCTGTCAATTGacagcatttacatttaaaaaaaaaaaaaactaaatatcccattcatttacaacatttaatttcagttcacGTTTTTGTCGCTTAACAATAAAGCAAACTAATGTCAAATCAGAAATGACAATATCTGTTAAATCTATATAAATAGCTGTTATTCTCCCTCTCCTCTCagatgggccaactttggcctgtgggCACTAGTTTGGGCATTTCTGTCCTAAAATATGATTCCTGGCTATTGTTTATGTCTCTAATTGATTTTTATAGTCCTATTTATGAATATACTCTCCTACTACCAGAATCAGCTGTGAAAACTATTAAGCGCTttcttattataattaaataaagggatagttcacccaaaaaatgaatacACTCCATTAACACCTGCTTCAAAATTTGAGTTTGTTTCTGTTGAGGGCCTCATGTTGGCGCAGTGGGAAGCAttgctgcctcacagcaataaggttgctggtttgtccctgggctgggtcagttggcatttctgtgtggagtttgcatgttctccccttgttcgtgtgggttccccctacagtccaaacacatgcggtacgggtgaattgggtaagctaaattgtccatagtgtgtgtatgagtgtggattattcccagtgatggattgcagctggaagggcatccgctgcatgaaacgtgctggataagttggcagttcattccgctgtgacgacccccgAGTAacaaaggtactaagctgaaaagaaaatgagtgatcGTTTCTGTAGAACTAAAAAGGAGATATTTGCAATGATCTTTATGCAATAAATCTGCAAGTTAATGTCTATAATGTCTTATATTGCATTGTAATGCAATGTGCACCTCTTGTTAAAGCTGCCTTGAAACTATAATTGTagaaagtgctatacaaatacacttgaTTAGAATTAAATCAGATATTGGAAGCTTATTGGCAACAAAAGTTTTATGGAAATCAGTGGTtatcaaacattcttcaaaacatctgccTTTTCATTCACTAGAAGAAACTCAAACTTGTTCATAATAACTTAAAGGTGAGTCAGAATtgtcatttgtgggtgaactatccctttaaatgacacGCTTTAGAAAACTAGGCTGAAGGTGTAGTCAAAATATGCTTGTGGGCATTTGTGAATGTCACTGAGATCGTGTTTCCCTGCTGCTATTATACCTCCACAAGCAGATCTCCATCAACTTCTGACTGGAGATCTGCACATTTGCTCATTTAGTTCATCTGCATCTGATGTGTGTGCAGGCCTGAAAACCCTACAGTAACCTGACGCTCGGCCTTGAATGTGACTGGGCTTGCAGTAACAGGTCTGTTCTAGTGTGTAGGTCAGATATCTGTGCAATCTGGGCTCTTGTCTTCGTGCTCAGTGTTTTCTGTATACGTGATGATCCAGAATTAAATGCCCTCATTCCGGACCACAGATAAAAAGACCTTAAAGAAATTCTCTGGCTTGAAATGACCATGTTAAAATGCAAAATTCCTTCATGCTGCCCCAATACAAATAGATTACGATTACTGAAA
>TCONS_00055161
GTGACGGCCATCTCTCTGATCAAGCAGTCGAAGGTTTCTGCTGACGACCGCTGCAAAGTTCTCATCAGCTCACTGCAGGACTGCTTGCATGGAATCGAGTCCAAATCGTATGGCTCTGTGGCAGGTGCCATGGCAGATTTAAATCAGGGACACAATGGATTTTACCGACGGGAGCGGTCCAGGGAGAGAGATCACAGTCGCTCTCGTGAGAAGAGCCGCCGGCACAAATCTCGCAGTCGAGACCGGCATGAGGATTACTACCGGGAGCGCAGCCGAGAGAGAGACCGCCATCGTGAGCGAGACAGAGACCGCGAGAGAGACAGAGAACGCGAGAGGGAATATCGCCACCGTTAATAGGAGAAGAAGCTGAAcgcaagaggaggaggaggagacgcCAGGAGCAACGAGGATTCatcgcgcacacacaaacaccgtCACGGAGAGCGCCGGACTCCGGACACACTAAAAAAAGTAGAGTTCTGTACAATACTATATACTCACTCTCTTAATTCCCTGCAGCtctttttattttgtacttttatttggAAGTAGCTGTGTGCTTAAGTCAGTTCAGCTTGTTTTGGCCAAGGAAGTGAATTATTTGCCTGCtcgttcaaaaaaagaaaaaaatacacacacacaactttcCGACTGCTATAATGTTGTAAATTGTCAGTTAGCTAGATTTGTTTTTATAGGATCCTTTCTTTCGTTTCGTGTTTCTTCCCTCATTTCCCCCCCTTCCCATTATCCATATAATGTTTGTAAGTGTCTTTTGGCTTGATTATTAAATAGAATCTGTGTTGTAATAAA
>TCONS_00055162
CACCCGTTGGCGTCTCTTCTTCACGCGCAGTGAGAGCACCGAGGAGGAGGAGGGAAACAGAAAATGGCGGACGGTGTTGACCACATCGATATTTACGCGGATGTAGAAGAAGAATTTAACCAGGAGTCGGATTATCCTGTTCATGACCAGATTGACCTGTATGACGATGTCATCTCGCCATCTGCCAACAACGGGGACGCACCCGAGGACCGAGATTACCTGGATTCCCTTCCTGCACCTGGAGGCAACGAGGGCTCCAAAGGGGCTCCAGCTAATGTCGTCTACACCTACAATGGCAAACGGATCGCTCTGTACATCGGAAACCTCACATGGtgGACCACTGATGAAGATTTAACAGATGCCATTCGCTCAATAGGCATCAATGATGTGCTGGAGATCAAGTTTTTTGAGAACAGAGCAAATGGCCAGTCTAAAGGGTTTGCTCTGGTCTGCGTGGGATCAGATTCCTCTTCCAGGAAGCTCATGGATCTGTTGTCTAAACGGGAGCTGCATGGACAAAACCCCATCGTCACCCCTTGCAACAAACAGTCTCTCAGTCAGTTCGAGATGCAGTCACGAAAAAGCACACAGTCAGGACAGATGTCAGGAGAGGGGAAGGCTGGTCCTCCAGGCTCAGGATCTCGAGGTGGAGGATTCCCTCCTGGCAAAGGTCAGAGACGCTTTCCTGGCCCACCTGGACAAGGAGACCGCTTCCCTGGACCGGTTGGACCTGGCGGTCCTCCACCACACTTCCCAGGTATGCAGGGCCCACCACGTCTTCCCTCTGGCCCACCTGGGCCCCTGGGACCTCCAGGCCCCCCTCCACCTGGACAAGGTCTGCCTCCTCCCCTCGGCGGACCCCCTAACAGAGGAGACCGTCCTCCTCCACCTGTCTTGTTTCCTGGTCAGTTCGGGCAACCCCCAATGGGCCCGATGCCTCCTGGGCCTCCCCCACCAGGATACGGGCCTCCCCCAGGCCCCCCTCCACCTCAGCAGGGACCACCCCCTCCAGGACCCTTCCCTCCCCGTCCACCTGGGCCCTTAGGACCCCCGCTTGGCCTCGCACCCCCACCACACATGCAGGGACCCCCACCTGGAGGCCCACCGCCGGCTCCTCACGTCAACCCGGCCTTCTTCCCACCACCTGGAAACAACATGCCATCATCTGACGGCAGAGGACCCCCACCTGGAGACCCGTACGGCCGCCCACCTCCTTATGACAGAGACTTCCCTGGTGGCAGGGACATGGATGCGTCTCGCACTCCCCTGAGCGAAGCTGAGTTTGAGGAGATCATGAACCGGAACAGAGCGATTTCCAGCAGCGCTATTTCAAGGGCCGTTTCTGATGCCAGTGCAGCTGATTACGGCAGTGCTATAGAGACTCTGGTGACGGCCATCTCTCTGATCAAGCAGTCGAAGGTTTCTGCTGACGACCGCTGCAAAGTTCTCATCAGCTCACTGCAGGACTGCTTGCATGGAATCGAGTCCAAATCGTATGGCTCTGTGGCAGGCCGACGGGAGCGGTCCAGGGAGAGAGATCACAGTCGCTCTCGTGAGAAGAGCCGCCGGCACAAATCTCGCAGTCGAGACCGGCATGAGGATTACTACCGGGAGCGCAGCCGAGAGAGAGACCGCCATCGTGAGCGAGACAGAGACCGCGAGAGAGACAGAGAACGCGAGAGGGAATATCGCCACCGTTAATAGGAGAAGAAGCTGAAcgcaagaggaggaggaggagacgcCAGGAGCAACGAGGATTCatcgcgcacacacaaacaccgtCACGGAGAGCGCCGGACTCCGGACACACTAAAAAAAGTAGAGTTCTGTACAATACTATATACTCACTCTCTTAATTCCCTGCAGCtctttttattttgtacttttatttggAAGTAGCTGTGTGCTTAAGTCAGTTCAGCTTGTTTTGGCCAAGGAAGTGAATTATTTGCCTGCtcgttcaaaaaaagaaaaaaatacacacacacaactttcCGACTGCTATAATGTTGTAAATTGTCAGTTAGCTAGATTTGTTTTTATAGGATCCTTTCTTTCGTTTCGTGTTTCTTCCCTCATTTCCCCCCCTTCCCATTATCCATATAATGTTTGTAAGTGTCTTTTGGCTTGATTATTAAATAGAATCTGTGTTGTAATAAA
>TCONS_00055163
CGGCTTCACCCGTTGGCGTCTCTTCTTCACGCGCAGTGAGAGCACCGAGGAGGAGGAGGGAAACAGAAAATGGCGGACGGTGTTGACCACATCGATATTTACGCGGATGTAGAAGAAGAATTTAACCAGGAGTCGGATTATCCTGTTCATGACCAGATTGACCTGTATGACGATGTCATCTCGCCATCTGCCAACAACGGGGACGCACCCGAGGACCGAGATTACCTGGATTCCCTTCCTGCACCTGGAGGCAACGAGGGCTCCAAAGGGGCTCCAGCTAATGTCGTCTACACCTACAATGGCAAACGGATCGCTCTGTACATCGGAAACCTCACATGGtgGACCACTGATGAAGATTTAACAGATGCCATTCGCTCAATAGGCATCAATGATGTGCTGGAGATCAAGTTTTTTGAGAACAGAGCAAATGGCCAGTCTAAAGGGTTTGCTCTGGTCTGCGTGGGATCAGATTCCTCTTCCAGGAAGCTCATGGATCTGTTGTCTAAACGGGAGCTGCATGGACAAAACCCCATCGTCACCCCTTGCAACAAACAGTCTCTCAGTCAGTTCGAGATGCAGTCACGAAAAAGTGAGCGCAGAGGATTCGACAATTCACATTATCATAAAGGCACACAGTCAGGACAGATGTCAGGAGAGGGGAAGGCTGGTCCTCCAGGCTCAGGATCTCGAGGTGGAGGATTCCCTCCTGGCAAAGGTCAGAGACGCTTTCCTGGCCCACCTGGACAAGGAGACCGCTTCCCTGGACCGGTTGGACCTGGCGGTCCTCCACCACACTTCCCAGGTATGCAGGGCCCACCACGTCTTCCCTCTGGCCCACCTGGGCCCCTGGGACCTCCAGGCCCCCCTCCACCTGGACAAGGTCTGCCTCCTCCCCTCGGCGGACCCCCTAACAGAGGAGACCGTCCTCCTCCACCTGTCTTGTTTCCTGGTCAGTTCGGGCAACCCCCAATGGGCCCGATGCCTCCTGGGCCTCCCCCACCAGGATACGGGCCTCCCCCAGGCCCCCCTCCACCTCAGCAGGGACCACCCCCTCCAGGACCCTTCCCTCCCCGTCCACCTGGGCCCTTAGGACCCCCGCTTGGCCTCGCACCCCCACCACACATGCAGGGACCCCCACCTGGAGGCCCACCGCCGGCTCCTCACGTCAACCCGGCCTTCTTCCCACCACCTGGAAACAACATGCCATCATCTGACGGCAGAGGACCCCCACCTGGAGACCCGTACGGCCGCCCACCTCCTTATGACAGAGACTTCCCTGGTGGCAGGGACATGGATGCGTCTCGCACTCCCCTGAGCGAAGCTGAGTTTGAGGAGATCATGAACCGGAACAGAGCGATTTCCAGCAGCGCTATTTCAAGGGCCGTTTCTGATGCCAGTGCAGCTGATTACGGCAGTGCTATAGAGACTCTGGTGACGGCCATCTCTCTGATCAAGCAGTCGAAGGTTTCTGCTGACGACCGCTGCAAAGTTCTCATCAGCTCACTGCAGGACTGCTTGCATGGAATCGAGTCCAAATCGTATGGCTCTGTGGCAGGCCGACGGGAGCGGTCCAGGGAGAGAGATCACAGTCGCTCTCGTGAGAAGAGCCGCCGGCACAAATCTCGCAGTCGAGACCGGCATGAGGATTACTACCGGGAGCGCAGCCGAGAGAGAGACCGCCATCGTGAGCGAGACAGAGACCGCGAGAGAGACAGAGAACGCGAGAGGGAATATCGCCACCGTTAATAGGAGAAGAAGCTGAAcgcaagaggaggaggaggagacgcCAGGAGCAACGAGGATTCatcgcgcacacacaaacaccgtCACGGAGAGCGCCGGACTCCGGACACACTAAAAAAAGTAGAGTTCTGTACAATACTATATACTCACTCTCTTAATTCCCTGCAGCtctttttattttgtacttttatttggAAGTAGCTGTGTGCTTAAGTCAGTTCAGCTTGTTTTGGCCAAGGAAGTGAATTATTTGCCTGCtcgttcaaaaaaagaaaaaaatacacacacacaactttcCGACTGCTATAATGTTGTAAATTGTCAGTTAGCTAGATTTGTTTTTATAGGATCCTTTCTTTCGTTTCGTGTTTCTTCCCTCATTTCCCCCCCTTCCCATTATCCATATAATGTTTGTAAGTGTCTTTTGGCTTGATTATTAAATAGAATCTGTGTTGTAATAAA
>TCONS_00055164
TAAGGTTTGCATGATCTTTCATGTACATGATGCGCATTTTGAGACCTCGTTTGTATTACCAGTGCCATGGCAGATTTAAATCAGGGACACAATGGATTTTAGTAAGTggaaatttaattataaatgatGTCAGAGATTTTCATGATCCTGTCaaatcactttatttttaatgtagcaCTTTGGGTTTTAAGAAtgcattattataaataaaattatatgagTCAAATGCAgttttgcacaaaaaaaacaaattggaaaatgcattaaaataagtcaaaataaagCAGTTAGTGTTAAATATGTATGAAATATGATCagctttgtttttaaattcagacATTGTCTATTGTTTGTGTTGTCCAGGTTTATTCATCtattaatttaatacttttttattttctttgatgCTTTTCATCCTTAAGCCGACGGGAGCGGTCCAGGGAGAGAGATCACAGTCGCTCTCGTGAGAAGAGCCGCCGGCACAAATCTCGCAGTCGAGACCGGCATGAGGATTACTACCGGGAGCGCAGCCGAGAGAGAGACCGCCATCGTGAGCGAGACAGAGACCGCGAGAGAGACAGAGAACGCGAGAGGGAATATCGCCACCGTTAATAGGAGAAGAAGCTGAAcgcaagaggaggaggaggagacgcCAGGAGCAACGAGGATTCatcgcgcacacacaaacaccgtCACGGAGAGCGCCGGACTCCGGACACACTAAAAAAAGTAGAGTTCTGTACAATACTATATACTCACTCTCTTAATTCCCTGCAGCtctttttattttgtacttt
>TCONS_00055165
GCTGATTACGGCAGTGCTATAGAGACTCTGGTGACGGCCATCTCTCTGATCAAGCAGTCGAAGGTTTCTGCTGACGACCGCTGCAAAGTTCTCATCAGCTCACTGCAGGACTGCTTGCATGGAATCGAGTCCAAATCGTATGGCTCTGTGGCAGGTGCCATGGCAGATTTAAATCAGGGACACAATGGATTTTACCGACGGGAGCGGTCCAGGGAGAGAGATCACAGTCGCTCTCGTGAGAAGAGCCGCCGGCACAAATCTCGCAGTCGAGACCGGCATGAGGATTACTACCGGGAGCGCAGCCGAGAGAGAGACCGCCATCGTGAGCGAGACAGAGACCGCGAGAGAGACAGAGAACGCGAGAGGGAATATCGCCACCGTTAATAGGAGAAGAAGcgTGATCTGAATACTCTGATTCTTTTACATTTTATGCACATGGTCTTGAAGCAGTTTAATGTGAAAAATCAGCCCCAGTGACTATAAACTGTCCTGCAATTGTTGTATATGGAAGAGATTTATATGTATTGAAAATAAGTTACTGCACTTCAGTGTTTGTCCACATGTAGGTTATTGACATTTGCTGCTAGTTGTAAACTTACTCCAATTTTGTCTGAAACTGGTCATAATGCCTTAAAGTGACTATTGCATTAAATTCAGCATGTATTGCATTTGAATTTATGAAATATCGATGTCAAAATCATTGTAGTTTAAGGAGAAGGGTCAGTGTCTTAACTCCACATTGAAACCGAATGAGCGAAATCATGTTTCTCAGGTTATGAATTGACATTTCTGTAGGTACATTTGATATTGACAGAATAATTGTGGTTCGGGTGTTTTAAGTTCTTCATTTAAATTGTTGTAAACGGCAAATGATTGGACTCTAATTGACCTCATTTGGCA

Function

symbol description
cpsf6 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA alternative polyadenylation; positive regulation of RNA export from nucleus; and protein-containing complex assembly. Predicted to act upstream of or within mRNA processing. Located in paraspeckles. Is expressed in several structures, including blastomere; central nervous system; digestive system; eye; and yolk. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6).

GO:

id name namespace
GO:0110104 mRNA alternative polyadenylation biological_process
GO:0046833 positive regulation of RNA export from nucleus biological_process
GO:1990120 messenger ribonucleoprotein complex assembly biological_process
GO:0006397 mRNA processing biological_process
GO:0051290 protein heterotetramerization biological_process
GO:0042382 paraspeckles cellular_component
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0035061 interchromatin granule cellular_component
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005726 perichromatin fibrils cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5277 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA alternative polyadenylation; positive regulation of RNA export from nucleus; and protein-containing complex assembly. Predicted to act upstream of or within mRNA processing. Located in paraspeckles. Is expressed in several structures, including blastomere; central nervous system; digestive system; eye; and yolk. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6).

Ensembl:

ensembl_id ENSDARG00000018618

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055160 False 6240 mRNA 0.41 11 2041067 2059233
TCONS_00055161 False 813 mRNA 0.47 4 2045132 2052687
TCONS_00055162 False 2160 mRNA 0.54 10 2045132 2059296
TCONS_00055163 False 2205 mRNA 0.54 10 2045132 2059302
TCONS_00055164 False 797 lncRNA 0.40 2 2045406 2052508
TCONS_00055165 True 900 mRNA 0.43 4 2051188 2052717

Neighbor

gene id symbol gene type direction distance location
XLOC_028410 FAR2 coding downstream 4447 1988460 ~ 2036620 (-)
XLOC_028408 NA coding downstream 62010 1915786 ~ 1979057 (-)
XLOC_028409 si:ch73-177h5.2 coding downstream 111043 1921011 ~ 1930024 (-)
XLOC_028407 ano6 coding downstream 126839 1878573 ~ 1914228 (-)
XLOC_028406 NA coding downstream 185296 1848660 ~ 1855771 (-)
XLOC_028412 kcnc2 coding upstream 1222 2060524 ~ 2196928 (-)
XLOC_028413 si:ch73-278m9.1 coding upstream 151015 2210317 ~ 2219705 (-)
XLOC_028414 krr1 coding upstream 199633 2258935 ~ 2265271 (-)
XLOC_028415 phlda1 coding upstream 290033 2349335 ~ 2350371 (-)
XLOC_028416 nap1l1 coding upstream 295590 2354892 ~ 2380173 (-)
XLOC_028393 NA non-coding downstream 781326 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 806831 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 1005021 1028836 ~ 1036046 (-)
XLOC_028417 NA non-coding upstream 332770 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 386455 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 604866 2664168 ~ 2666870 (-)
XLOC_028427 NA non-coding upstream 1191472 3250774 ~ 3257564 (-)
XLOC_028428 NA non-coding upstream 1246843 3306145 ~ 3308415 (-)

Expression


Co-expression Network