Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055165 |
| length | 900 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 4 |
| gene id | XLOC_028411 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 2041067 ~ 2059302 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0110104 | mRNA alternative polyadenylation | biological_process |
| GO:0046833 | positive regulation of RNA export from nucleus | biological_process |
| GO:1990120 | messenger ribonucleoprotein complex assembly | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0051290 | protein heterotetramerization | biological_process |
| GO:0042382 | paraspeckles | cellular_component |
| GO:0005849 | mRNA cleavage factor complex | cellular_component |
| GO:0035061 | interchromatin granule | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005726 | perichromatin fibrils | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-5277 | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA alternative polyadenylation; positive regulation of RNA export from nucleus; and protein-containing complex assembly. Predicted to act upstream of or within mRNA processing. Located in paraspeckles. Is expressed in several structures, including blastomere; central nervous system; digestive system; eye; and yolk. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6). |
| ensembl_id | ENSDART00000150844 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00057986 | lncRNA | downstream | 72131 | 1942033 ~ 1979057 (-) | False | XLOC_028408 |
| TCONS_00057985 | lncRNA | downstream | 72201 | 1916275 ~ 1978987 (-) | False | XLOC_028408 |
| TCONS_00057987 | lncRNA | downstream | 76124 | 1974147 ~ 1975064 (-) | True | XLOC_028408 |
| TCONS_00057308 | lncRNA | downstream | 134622 | 1915786 ~ 1916566 (-) | False | XLOC_028408 |
| TCONS_00057984 | lncRNA | downstream | 195417 | 1848660 ~ 1855771 (-) | True | XLOC_028406 |
| TCONS_00057309 | lncRNA | upstream | 339355 | 2392072 ~ 2397407 (-) | False | XLOC_028417 |
| TCONS_00057988 | lncRNA | upstream | 393040 | 2445757 ~ 2479720 (-) | False | XLOC_028418 |
| TCONS_00057989 | lncRNA | upstream | 395122 | 2447839 ~ 2479720 (-) | True | XLOC_028418 |
| TCONS_00057310 | lncRNA | upstream | 611451 | 2664168 ~ 2666870 (-) | True | XLOC_028422 |
| TCONS_00057990 | lncRNA | upstream | 1198057 | 3250774 ~ 3257564 (-) | True | XLOC_028427 |
| TCONS_00055158 | mRNA | downstream | 14568 | 1988460 ~ 2036620 (-) | False | XLOC_028410 |
| TCONS_00055159 | mRNA | downstream | 36782 | 1989489 ~ 2014406 (-) | True | XLOC_028410 |
| TCONS_00055157 | mRNA | downstream | 121164 | 1921011 ~ 1930024 (-) | True | XLOC_028409 |
| TCONS_00055156 | mRNA | downstream | 136960 | 1880180 ~ 1914228 (-) | True | XLOC_028407 |
| TCONS_00055155 | mRNA | downstream | 143009 | 1878573 ~ 1908179 (-) | False | XLOC_028407 |
| TCONS_00055167 | mRNA | upstream | 94574 | 2147291 ~ 2168805 (-) | False | XLOC_028412 |
| TCONS_00055168 | mRNA | upstream | 98662 | 2151379 ~ 2162688 (-) | False | XLOC_028412 |
| TCONS_00055169 | mRNA | upstream | 105144 | 2157861 ~ 2196798 (-) | False | XLOC_028412 |
| TCONS_00055170 | mRNA | upstream | 108145 | 2160862 ~ 2196928 (-) | True | XLOC_028412 |
| TCONS_00055171 | mRNA | upstream | 157600 | 2210317 ~ 2219705 (-) | True | XLOC_028413 |
| TCONS_00055131 | other | downstream | 1102346 | 937229 ~ 948842 (-) | True | XLOC_028386 |
| TCONS_00055123 | other | downstream | 1242735 | 804147 ~ 808453 (-) | True | XLOC_028380 |
| TCONS_00055111 | other | downstream | 1365769 | 683052 ~ 685419 (-) | True | XLOC_028374 |
| TCONS_00055166 | other | upstream | 7807 | 2060524 ~ 2162724 (-) | False | XLOC_028412 |
| TCONS_00055185 | other | upstream | 622389 | 2675106 ~ 2686090 (-) | False | XLOC_028423 |
| TCONS_00055220 | other | upstream | 2439849 | 4492566 ~ 4496791 (-) | True | XLOC_028449 |
| TCONS_00055225 | other | upstream | 2493492 | 4546209 ~ 4570805 (-) | True | XLOC_028452 |
| TCONS_00055239 | other | upstream | 2877694 | 4930411 ~ 4932524 (-) | True | XLOC_028460 |
