RNA id: TCONS_00057309


Basic Information

Item Value
RNA id TCONS_00057309
length 4900
lncRNA type sense_over
GC content 0.32
exon number 2
gene id XLOC_028417
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2392072 ~ 2440175 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ataataaactgtgcaaacacacacacacgcatgcacacacacagactgcacACATATAaataccacacaaacacacacataaacaaataccacacacacacacacacatacaattaacagtgcaaacaaacattaaacagtgcaaacacacacacagactgcacACATGTAAATaccacgcaaacacacacaaaaacaccacacacaaacataaacaccactcacaacacacacacacacagactgcacACATGTAAataccaaacaaacacacacacataaacaccaaacacacaaaaacaaaaaccacacacatacaattaacaaacaaacataaaaaaaagtgcaaacacacacacacacacacacacataaatacctCACACACGtaaaaaccacacaaacacacgcataaacgcaacacacacataaacaccacacacaaataaacaaattctaCGCGCACACAGACAAAATTTCTGCACACACCTtaaactacacaaacacacatataaacaaataCCACAGATACAGAGACATAAATACTGCGCGGACATatacaccacacaaacacacacacacttacacacttgcaaaaacaaataccaccctaacacacacacacataaacactgccCACATTATAacagatcacacacacaaacacacacacaaacgtacaAAACACTAACTGAGATCTTTCCCTCAGGGCACAAAAGCAAACACAGCAGCCGCCACAGGAAGAAAGGAACCGATCTGAGCGAAATCCAAAGTGCCATTGAGTCCATCCGGCAAACCCAGGAGGACATTAACAGGAGCGTCAGTGCGCTGAGGAGTCGCATGGCCAGTCAGACGTCGACGGAAAGTTCGTTTCTGACGCACCGAGACATCGCCATCATCCTCTTCCTCATCTTCCTCCAGGTCCTGCTCAACTTCATCTTCAAGTAACGCCACAAGCATTCAGTATCAGCTCACGACACACTGACGTTTCATTCGCCACGTTTTTATCAATTCGTGTTGTGAGCGCTGGGAAAAGGATGGCAATACGGTTGAAGTGCATTGTGGGATGTTTTTCGAAATGACTGTTTACTTTTTGTCCTTCAAAAAGAGGAGTTATCATCAGCCtccaaatgttgttttaatttattggagtaatatttttaacaatgtttttacaTCGGCGCCCCCTGCTGTGGCGGAGGATGCTAGTCGATATACAAACGGGAAATCTCTAGGTCATATTTTGATTGAAGATATGCATTTTATTGCCTGTTTTTTTAGAGTTATGATATTATTTTCATGACCAATAAGCACATTTCAACCCCGATTCTCATTGTgtggactgcaaaaaaagaagaaactcTTGTTACTATAATCTACAACGTATGCTGTATTATTAGTATTTGTGATAGTATTCATATTACTGCCTTTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTgtcttaatgcatttttttttgtttataggatgtaaaaatgtgaaaaatgtaaaagaataaTTAGCAAGAATTGCCCAAATTTTAAACTTTAAGAGCGCCCCCTGCTGTAGTGGAGGAAACCACGTAGTCAATTCACAAACTACGCTAGTATCAcaaaaatattgcattattttaacTCAAATTGTAAATGCAAAGAGTGCCCCCTGTTGTAATGGAGGACAGCAGTCAGTCTAACAGACTAAAAAAAATGTAGGTCATATTTTACCCTAAAATCATGAGAAAATACAGTAATATGCAAAAAATCTTAATCTTATAATATGttgtgttatattattatattaatatacatataaGCACATTTCAAGCGATATTCTCATTCCTGAAGTGCAGAAAAActcatttatttaaactttaatccCAACAAAATGAGGCAAAAGTGAAATTAGGACCTCGAATTTCATTCGTATACTGAGTTGTAATAAAATCTGAGATGTTCAATAATAATGCTTAATATTTCCTTTAAAataaggcaaagataaaattagctgcacttttattttgtatactgATATAAAATTAAATCTGAGATGCACAATGATAAGAAGAATTTGGAAAGGATAAATATTTCCTTCAAAATAGAGTGAAATTAGTGCCTCCTTAAATTTGTGTATAGATATATAATACATCTGAGGTGcacaataataagaagaagaatttgGAAATGATATATACTTCTTTCATAAAACAGTGAAAATAGTGCCGCCATTAATTCGTATACtgatatataattaaatatgagATGCTCAACATTAATGAGAATttgaaaattacaaatatttctaaaaatattaaattagtgTGACCTTTAATTTGTGCATGGATATTAAAGAAAATCTGAGATGCAATATAATAACACGAATTtggaaattataaatgttttcttcAGTATTAGATGAACTTAGTGCCGCCTCATTCGTATAAGGATATAAAATTAAATCTGAGATGCACAGTAATGATACGAATTTGGAAATGAtgaatatttctttaaataataaggggtgaaatttaaataaaatattgtacatGGATATATAATATGTCTGAGAtgcacaataattataataagaaTTTTAAAATTTCCTTCGAAATAAGATGAAAGTGAAATTAGTGCCTCGTATTTAATTCATATACtgatatataataaatatgagtTGCACAATAATAACAAGATATTGGAAATTATTTGAAATTAGTGTCACTTTTAGATATACAATTAAATCTGAGATGCAAAATAATTAACAGTGTTTGGAAATGCTGAATATTTCCTTCAAAATAAGGTGAAAGTGAAAATAATGCCGCCATTAATTCGTATATTGACATATAATTAAATATGAGATGCTCAACAATAACGAGAATTTGGAAATTACAAATATTTCTTTCATAATAAGGGGTGAAAGTGGAATTAGTGTCACCTTTAATTTGTGTACGAATATAAATAAATCTGACATGCACAACAGTGATGAGAATTTGgaaatgctaaatatttttgatGAATAGTAACGGGAGATTGgaaatgctaaatatttaaacaaatgtttttgacTTATAAAAATATGAcctagacatttttttttgttcaaacgAAAAACATTTAAAGGAAAAAATCGAAGGTTCAATTTTCTTGCTGTTACTGGATATTTGACAGCAGATTTATGAAGGATTATTTTGCCACACGAGGTCAaactttgtattatttaaaaaacaaagcaaacaacgGGAACAATTTCACTTGAAATCTTAACTTTAAACAGCACAGTATGTGGATCCTGCATTTCATACGCTCGCGGCTTGCATTTTGAAGGAAAGAGAAatcttaatttattatattagtatGTACAGTAAAGCGAGCGAGCGTCCGGTTTaatatttactctctctctcttgagGAAAAGCGTAGATGTAGTGAAACTGTAGCAGGAAATTAACACTGTCGTCTCGTCCGCCACTGTTGCGAATTAAAAAGCCAAATAGTCTGCGAGTAGATTAGCGTGATTAGCGTCAACCTCTGTACATATGAAGAACcggtgtgtgttttttgtttttgtaccaGAGAAGAGCGTCACCCATCTGCCCACGTGTCTGAATGTGtgctaaaaaataataacttaattaaaatacaaaaaaccaCGTGCCTTTACCAGCGGGAATGCGGAGTTTTGTCTGGAGTGAATGTGCCATACTGAATATCTGCTCTCACTGTGAGTCCTACATTCTTTTCGTCCTGGAGCTCAAAGCTGCCAttattctcttttcttttcttttcttttcttttttattattattatgattattattattattattgataattttttatttaatttaattttttatttttttatttactttttgttttatttattgattttatattttgtgtttgttttattgttattttattatttttttatttaattaatttgttttgttttattatttttttatttaatacattttttattatttttattttatttatttattttttgttttattctattttcagttattttattttgtgtttgtttaatttttattttatttatttatttttgttttattttacttaaatttctttgttatttaattaattaatttattttttgtttgatttaattcatttttctttattttatttttattgaatttttatttattttattttttgtctgttttattttttattgtattcattttttatttattttattttattttatttttatttttttttttttattttattttttttttatcaagccAGGGATCAAACTCTCCGTCTCCTGCTGTCTGTTCAGTGTTTGTCACGTTTCACATTTCACGCTTTCCAGTTCGgctgttcttgttttgttttgtttggccCATGTTCATTTTGAagggtttttattttgttttagatttattttctGTCCTGCAGCCGTCTCTGTATGTACAGACGATGCTTTGTTTGTATTAACACAAATAACCTCCTGTAAGTTTACTGTCATCTGTGACATGTcaccaaataaatgaaaaacactgaTCATTTTAGTTAGTTTGGGTCattattgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttatatagtgcatttattatgTTTGGCCATACACCcgaagcgctttacaatcatgaggggggtctctccacaccaccaccagtgtgcagcataccCTTGGATgttgtgacggcagccacaggacaacggcgcc

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0051983 regulation of chromosome segregation biological_process
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006996 organelle organization biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0051641 cellular localization biological_process
GO:0016043 cellular component organization biological_process
GO:0000280 nuclear division biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055164 lncRNA downstream 339564 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057986 lncRNA downstream 413015 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057985 lncRNA downstream 413085 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057987 lncRNA downstream 417008 1974147 ~ 1975064 (-) True XLOC_028408
TCONS_00057308 lncRNA downstream 475506 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057988 lncRNA upstream 48350 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA upstream 50432 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057310 lncRNA upstream 266761 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057990 lncRNA upstream 853367 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00057991 lncRNA upstream 908738 3306145 ~ 3308415 (-) True XLOC_028428
TCONS_00055174 mRNA downstream 11899 2354892 ~ 2380173 (-) True XLOC_028416
TCONS_00055173 mRNA downstream 41701 2349335 ~ 2350371 (-) True XLOC_028415
TCONS_00055172 mRNA downstream 126801 2258935 ~ 2265271 (-) True XLOC_028414
TCONS_00055171 mRNA downstream 172367 2210317 ~ 2219705 (-) True XLOC_028413
TCONS_00055170 mRNA downstream 195144 2160862 ~ 2196928 (-) True XLOC_028412
TCONS_00055176 mRNA upstream 114222 2511629 ~ 2525916 (-) False XLOC_028419
TCONS_00055177 mRNA upstream 115695 2513102 ~ 2525934 (-) False XLOC_028419
TCONS_00055178 mRNA upstream 115697 2513104 ~ 2525934 (-) True XLOC_028419
TCONS_00055179 mRNA upstream 133434 2530841 ~ 2545345 (-) False XLOC_028420
TCONS_00055180 mRNA upstream 144090 2541497 ~ 2545310 (-) True XLOC_028420
TCONS_00055166 other downstream 229348 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 1443230 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1583619 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1706653 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055185 other upstream 277699 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2095159 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2148802 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 2533004 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 2972649 5370056 ~ 5371622 (-) True XLOC_028470

Expression Profile

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