RNA id: TCONS_00055171


Basic Information

Item Value
RNA id TCONS_00055171
length 1012
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_028413
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2210317 ~ 2219705 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAAGATTTTTGTCAACATTGGGGGAATGTTCGTGGGACGTGTGGGTGGTCAgcattagtttagtttttgtgtgtttttccgGTCGAGATGGTTTTGTCCTCCTCGCAGCAGCTCGTCATGGCGTTCACCGCGGTGCTGCTGGTGTTCGTGCTGTTCCCGAGGCTGTTCGGCGGCGGCAGCAGAGACAATCAACCGTACGAGCCGCGGAGCAACCGGAGAGCAGCAGGTCCCGGTCCGGGTATCGGTGCAGGAGCTGTGAGGAATCAGCAGCAGCTCCAGAAGGGCGCAGCACCTCAGATGAGCCACAGTGTGGAAAACATGCAGCAGATGAAGAAACTGATGGAGCAGGAGCTCAAGAGCGACAAATACAAATCCAACAACAACAAGGGCTACGTCTTCACACTCATGCCCATCTACGCCATCGGGGTCGGCCTCTTTGCTGCTTACAAGTTTCTCAAGATAAAGTCTGCAAGCGACTCTGAAGCTCAAAAAGCCAAAACAGCTCGAGGAGTGAAGAAATCCGAGGAAACAgAGAATCAGCTGAATGAGTTGGAGCAAAGGTTGGCTCAGACGGAGAAGATGCTCAACTCTATACTGACACAACTGGACCCGCTTACAAACTGTGTGAAATCTGTTGCCATGGAGCAGAAGAACGAGATCATGTCGCAGCTGCAGTGCATTCGCCAGCTAATGAAGAAGAGGGGCATGGAGTGTCCAAACATCAGGATAGAAGAGCCGAGCTGTGAACGCAATCTAGACCAGCTCATCCAGAATCTATCTGCAGCAGAAACGCAGCCAGAAACCAGCCAGGAAACACAGACCAGTGCAGAAACACAGAAGACAGAAGAGGAAGTGGAAGAGGACGTAGAAGAGGAAGTGGACACACAGCAGGAAGAGGAAATGGACAGTGATTCTAGTCTGCCTTCCCTTGAGGACAGTGTAGACGATGTCTCTGACACTCAGAAACTTCCAGAAGAGCTGGCTGAAGGATTACGGAGACGCCACAGACC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-261 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human CCDC107 (coiled-coil domain containing 107).

Ensembl:

ensembl_id ENSDART00000131046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055164 lncRNA downstream 157809 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057986 lncRNA downstream 231260 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057985 lncRNA downstream 231330 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057987 lncRNA downstream 235253 1974147 ~ 1975064 (-) True XLOC_028408
TCONS_00057308 lncRNA downstream 293751 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057309 lncRNA upstream 172367 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00057988 lncRNA upstream 226052 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA upstream 228134 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057310 lncRNA upstream 444463 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057990 lncRNA upstream 1031069 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00055170 mRNA downstream 13389 2160862 ~ 2196928 (-) True XLOC_028412
TCONS_00055169 mRNA downstream 13519 2157861 ~ 2196798 (-) False XLOC_028412
TCONS_00055167 mRNA downstream 41512 2147291 ~ 2168805 (-) False XLOC_028412
TCONS_00055168 mRNA downstream 47629 2151379 ~ 2162688 (-) False XLOC_028412
TCONS_00055163 mRNA downstream 151015 2045132 ~ 2059302 (-) False XLOC_028411
TCONS_00055172 mRNA upstream 39230 2258935 ~ 2265271 (-) True XLOC_028414
TCONS_00055173 mRNA upstream 129630 2349335 ~ 2350371 (-) True XLOC_028415
TCONS_00055174 mRNA upstream 135187 2354892 ~ 2380173 (-) True XLOC_028416
TCONS_00055175 mRNA upstream 176319 2396024 ~ 2440175 (-) True XLOC_028417
TCONS_00055176 mRNA upstream 291924 2511629 ~ 2525916 (-) False XLOC_028419
TCONS_00055166 other downstream 47593 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 1261475 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1401864 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1524898 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055185 other upstream 455401 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2272861 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2326504 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 2710706 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 3150351 5370056 ~ 5371622 (-) True XLOC_028470

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_02256946_02264417.mRNA True 2397 mRNA 0.42 6 CI01000066 2256594 ~ 2265481 (-)