RNA id: TCONS_00057989


Basic Information

Item Value
RNA id TCONS_00057989
length 530
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id XLOC_028418
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2445757 ~ 2479720 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGCAGCCTTAGTAGAACGTCGATCCTTCGAGCGCAAGCAGACAGAACTCAACGATCGCAGATAAACAGTCGCGCAAGGAAGGAAGACGGACGTGCGGGCGAAGGCGCGCCGTTGTATCGCAATTCAGCGCTGTTCTTTCGCATCAAAACGCGTTTATGCCTGCCAATTCAAGCCTTGTAGATCCTTCCTGCCTATGTGGGACCGTTCCCGACAATTTGCGTTAAAATTCGCCCGAGAAGTTTTAACCCATTTACTGATGGACTGACAGACGGATTCTCATCGGACGACGCAATCTAACGTACAGAATTCAACACTCACCTCTTTATTTTCCTTAAGAGACACCCTGTGTTACCCCCCAGGAGGGCTTTAGAGCGGACAATTAAGACATGCAGACGTGTGAAGAGCGCTGACTGTGGCTCTCTGCAGAAACATGGAGCCTTGTGCCGAGTCTCAGGCTGATCCGGACAGAGCTCAGTCTCACAGGCCGAGAGATAACACAGCAACAGATAACTAGATCTGTATGTTTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057309 lncRNA downstream 50432 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00055164 lncRNA downstream 395331 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057986 lncRNA downstream 468782 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057985 lncRNA downstream 468852 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057310 lncRNA upstream 184448 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057990 lncRNA upstream 771054 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00057991 lncRNA upstream 826425 3306145 ~ 3308415 (-) True XLOC_028428
TCONS_00057992 lncRNA upstream 912501 3392221 ~ 3405250 (-) False XLOC_028430
TCONS_00055199 lncRNA upstream 916602 3396322 ~ 3405050 (-) True XLOC_028430
TCONS_00055175 mRNA downstream 7664 2396024 ~ 2440175 (-) True XLOC_028417
TCONS_00055174 mRNA downstream 67666 2354892 ~ 2380173 (-) True XLOC_028416
TCONS_00055173 mRNA downstream 97468 2349335 ~ 2350371 (-) True XLOC_028415
TCONS_00055172 mRNA downstream 182568 2258935 ~ 2265271 (-) True XLOC_028414
TCONS_00055171 mRNA downstream 228134 2210317 ~ 2219705 (-) True XLOC_028413
TCONS_00055176 mRNA upstream 31909 2511629 ~ 2525916 (-) False XLOC_028419
TCONS_00055177 mRNA upstream 33382 2513102 ~ 2525934 (-) False XLOC_028419
TCONS_00055178 mRNA upstream 33384 2513104 ~ 2525934 (-) True XLOC_028419
TCONS_00055179 mRNA upstream 51121 2530841 ~ 2545345 (-) False XLOC_028420
TCONS_00055180 mRNA upstream 61777 2541497 ~ 2545310 (-) True XLOC_028420
TCONS_00055166 other downstream 285115 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 1498997 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1639386 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1762420 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055185 other upstream 195386 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2012846 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2066489 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 2450691 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 2890336 5370056 ~ 5371622 (-) True XLOC_028470

Expression Profile

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