RNA id: TCONS_00057310


Basic Information

Item Value
RNA id TCONS_00057310
length 2557
lncRNA type antisense_over
GC content 0.30
exon number 2
gene id XLOC_028422
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2664168 ~ 2666870 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cattttccatcagtcttagtgcatactgtaaatacagaagtcaaactttaaatagaaaaataaactaaattcttTGGCAATatttaagcaagatgctaatggtctaatccgattcaatgatgtatgctaagctaaaagtagtTCCCCGCtaaatcagcctagaaaataactTTACGTTTTGCTTTAGTCTTAGTATACAATGTAACCATAGAAGAGTCgtgctttaaataggaaaattatcaaaatttgttggtcatttttgagtgtgatggtctaatccgatttaatgatgtatgctaagctaaactaaaagtagTTCCCAGCTATTTCAGcctaaaaaataacaactttacAACTTCTATCAGTCATAGTGCACCATGTAAAAACAgaggagtcaagctttaaattgaAAAATTTTGTTGGTCATTTTTgatcgagatgctaatggtctagtccgattcaatgatgtatgctaagctaagttttTACTAGCTATATCAGCCTAAAAAATAACTTTACATTTTCCACCAGTCTTGGTacacaatgtaaataaaagagagtcaagctttaaacagaAAAATTATCTAAATTATTGGGCTTTTACTTGAGCGagacgctaatggtctaatccaattcaatcatttatgctaagctaagctaaaagtgcccctGCGAatcccagagatcagctgaatagattacaaaaaaatagtaaaattcaCCTGATTAACTCTAgaagagctgtaaaatgagcctaattACACAAAAAGGTGAAgagtttctttaaaataacaacTCTATACCCATTACTGTCCATATTAGGGGAAACATTACTATTAAAAAAGACTTAAATAAGGTATACAGTTGTCATTTTAACAGGTTCGCTCCAGTGACGAGCTAAATGACGAAGTTTTGCACATTTTATTAAACAACGATGCTAGAAAACTGTGAAACCGCTCTGATCATGTGACCTGACAGGAAGTCATCATCAGGAGTGTCAGGTGAGTGTGTTGAGGATGAACTGAGCGTAATGATGATTATCGTGCAGATTTACATTGTGTGGTGTGTCCGTTCCTCTAGTTTTCTTTTTTATCTCCGCTGTCCATCTGATTCTGGAAATTAGAAGAAAACAGTAAGCAAGGGTCTTCTATTGTTCTTGGTCACGTCATATTCTTTGATATTTGTcactaatggggtatatgcacacagacttttagttttcagccagccagccccgGGGCTtacggtgaactgtctttccattataacATTGACAAGTTTCAGGTCTGATTTCTTAATAAttaatcagtgatcttcactgtaAGGTTCACTCATACACATATTTACTTCTATAATTCCATGtcttttccatgatttttccaagactttcaagttTATTTTCACGACCTAAGGTTTTAGGCAATGTTTACTCATACATGGTGAAAGAAAAGtgatgcatgttcaaatttattgcAGCATATCGTAAAACACGCAGCAATCTATTTAgcttcaatttatatttaaatcgatgtaaaattgatttaaataatgctttcacttttccaaaactttgtgggtttttcctaaacttttccaggcctggaaaatgccatgtccaacttccatgacttttccaggttttccatgaccgtattaACCTTGCTGTCAGATATATGATCATGATATATgttataaagtgggtctcagaccggacaagaagcactgcttcTTTGGTAATTATTATTGGTGAAAATGTGTAGCTTAAAttgaaaaatgtgatttaaattaatattcttcTGATTTATATATTGTTGATCTTTACTTTTTCctgttttattataatatgttGATGGTATCCTGTGAAACATGGAAGCATTTGTACATcattttgttgtctaaaacatTACAGATTTAAAATATACGACAACTTTGCAGTGCTATTTTAATATCATTGAGATAGTTtctgttaacatttttattatttttttgtcttgtttgttttcctccaagttttaagttttattattgttactttAATTGCCATTTTTATAACtctgttgtgttttattgtttaaaatttacTATATTCTGTAGTTACTACATTTATTtgaatttgacatttatttttgatacaaaattatattttatttagaaaacatgttgcattttttaattatttttattattctttaattatttttaagtaccttttcctttcttttttgtcgttttgatgtttttatAAGACGTCTTACTAGAATTACTCTTATTATTGAATGTTTTTGTTGTCTCTGTATCTAAAGGtactaaatgtatttgttttggcacATTTTATCTATTCgtgtcatcatttattatttgtatctaaaattaataaatcactACTTTGTAAATTTCCTGTTATTTCAAGTTATTGTTATCTAATTTTACAacatgtttaattgttttttgtttggatTAGTGTTATATTAATccttaatgtttattattttgaacCTAAAATTaccaaatatttgtatttatttatttattttttaaataataaaaaaaatcatgc

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0010430 fatty acid omega-oxidation biological_process
GO:0044281 small molecule metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057988 lncRNA downstream 184448 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA downstream 184448 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057309 lncRNA downstream 266761 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00055164 lncRNA downstream 611660 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057986 lncRNA downstream 685111 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057990 lncRNA upstream 583904 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00057991 lncRNA upstream 639275 3306145 ~ 3308415 (-) True XLOC_028428
TCONS_00057992 lncRNA upstream 725351 3392221 ~ 3405250 (-) False XLOC_028430
TCONS_00055199 lncRNA upstream 729452 3396322 ~ 3405050 (-) True XLOC_028430
TCONS_00057993 lncRNA upstream 740841 3407711 ~ 3415152 (-) True XLOC_028431
TCONS_00055182 mRNA downstream 26458 2548783 ~ 2637710 (-) False XLOC_028421
TCONS_00055183 mRNA downstream 26458 2629776 ~ 2637710 (-) True XLOC_028421
TCONS_00055181 mRNA downstream 26479 2548783 ~ 2637689 (-) False XLOC_028421
TCONS_00055179 mRNA downstream 118823 2530841 ~ 2545345 (-) False XLOC_028420
TCONS_00055180 mRNA downstream 118858 2541497 ~ 2545310 (-) True XLOC_028420
TCONS_00055184 mRNA upstream 8028 2674898 ~ 2727573 (-) False XLOC_028423
TCONS_00055186 mRNA upstream 8254 2675124 ~ 2727563 (-) False XLOC_028423
TCONS_00055187 mRNA upstream 8315 2675185 ~ 2719128 (-) False XLOC_028423
TCONS_00055188 mRNA upstream 38833 2705703 ~ 2727491 (-) True XLOC_028423
TCONS_00055189 mRNA upstream 85982 2752852 ~ 2867461 (-) False XLOC_028424
TCONS_00055166 other downstream 501444 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 1715326 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1855715 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1978749 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055185 other upstream 8236 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 1825696 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 1879339 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 2263541 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 2703186 5370056 ~ 5371622 (-) True XLOC_028470

Expression Profile

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