RNA id: TCONS_00055189


Basic Information

Item Value
RNA id TCONS_00055189
length 3150
RNA type mRNA
GC content 0.59
exon number 15
gene id XLOC_028424
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2752852 ~ 2868112 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCACTGGAATCCGTGCGCAACGGCTATGTGCGCACTTGTGTCACTCCCGTGGAGCAGGACTGCTGGCACTCGTGCTTGCGAAGCCGTAGAAGCCTCTCGTCGGCCGTGTGCGTCGCCTCGCTGTCCGTGCTCCTCGCGCTGCTCTGGGACGCGGAGCGCACACACGCGCACTCGGGCTCTCACTTGGTGACGCTCGTGGAGCTCGTGTGGCAGCTGCTCTCGCCCGTCCTCACGCTCGTGTGTGCCTTCTTCTGGGTGGGTGTGTATCTGCTCCGCTGCGGGGTGCTGATCCGCACGGCAGTGTTCCTGCTCACCGTGTGCCATCTGGGCGAAGCGGCGGCGCAGTCGCTGCTGGATGCGCAGCAGCTGTACTCATTCACGGCCACCGCGCTGGTGCTGCTCGCCTGCCTGGCCAGCGGGGCGCTCATGGTGGTGCGGCTGGGTCAGGGCATCTCCGTGCTGCTCTTCATCAGCATCATCAGGACCGTGTCGCTTCTGTCGCTGCAGAAAGTGCGCGCCAGCTGGAGACCGTACCTGGCGTACCTGCTCGGGCTGCTCGGGGTCCTGCTGGCGAGGTATGCGGACAGGCTGCTGCCGGAGCAGGGCGCATCACACCGGGAGGGATCGAGGGGAGATATTCCGGTATTTAAGAGGCGCAGGAGGTCCAGCTCCGTAGTCTCGTCAGACATGGCACAGCACGGCCAGTCCAGAAGCAAATCGCACAGGAGGACATCTCTGCCCTGCCTGCAGAGAGAACAGTCTTCGGGCACCAGTGTGACGGTGGATATCGCGGTGATGGGCGAGGCTCACGGACTGATCTCAGACCTGCTGGCTGACCAGTCGCTCGCACCCAACATCTGCAGCACCCTGCGGGCCGTCAGTAACCTGCTGAACACCCAGCTCACCTTCCAGCCCCTGCACCACCGGCCACGCCTGGGCCCCCTGCTGGCCTTCAGCGACGGACACACGTGCTCCGACTCGGAGGAGAGGCTGGCTATTCCAAAGGTAAGGAGGAGTTTGCATCCAGGGCTTTTGAGACGGATTTCTTCCACGTGGACCACCACCACCTCCGCCACAGGCCTGCCAACCCTCGAACCCGGGCCGGTCCGACGAGACCGCAGCGCCAGCATCAAAGCACCTCACGATGGCCCTTCCAGCAGtgtcagtgtgtgtgtgtgctctctgacAGGTTGCTCTTCTTCCACCATCTCTCCTCTGGCGTCCCCCTGTCACTCTCCTCCAGTGCAGAGCTCTCCGCTGACCAGCCCCACCAACAAGACCCCCTCAGTGGAGCTGCCAGACCCCGAGCTTCCTCCACCACGCAGCCCACATAAAGCCTTAACCCACAGTCAGAGCGCACCCAGCTCCAGCGCAGCGCTCTGGCCACCGCCAACGCCACTATGTAGCAGGTACAACACAACTTTTGTTTTTGGCATGATCAGCTTTTTCAATCACCTTTCAGACGAGCCGGCGATGATGTCATCAGATTATGACAGCACGTATGAAACCAACCACAGTGACAGCAGCGACTTTGCACAGACTGACGAGGACAGAGAGGCTCGCAGGACGCTAACGCTAGCCACGCTTATACCAGCCGAGGAGAAGCCCATCTTGGCCCCGGAGCCGCTGCTGATGGAGGGACTGGAGCCGCTTCTGTGTCAGATCAACAACTGGAACTTTCCCATCTTCAGCCTGGTGGAGAAAACCAACGGCAGATGTGGCTGCATCCTCAGTCAGATGTCCTACCGACTGTTTGTCGACACGGGACTCTTTGAGACATTCAAGATTCCAGTGCGTGAGTTCATGAACTATTTCCACGCGCTGGAGAATGGATACAGGGACATCCCATATCACAACAGAATTCATGCCACAGACGTCCTCCATGCAGTCTGGTACCTCACTACACAACCTGTGCCTGGTTTACCCACACTGCGGACACTCGGCAGCTCCGACTCTGACAGTGGACTCGCTCACGGCCGGATGAAGTATCTGATGTCCAGGACTAATGCAGTGGAGGAGGAAGGTTACGGCTGTCTTTCAGGCCTCATTCCTGCGCTGGAGCTCATGGCGCTGTACGTCGCTGCTGCAATGCATGATTATGACCATCCTGGTCGGACCAACGCCTTCCTGGTGGCCACCAGCGCTCCACAGgctgtGCTATACAATGACCGTTCAGTGCTGGAGAATCATCACGCTGCCTCCGCCTGGAACCTCTTCATGTCGCGGCCCGAGTACAACTTTCTGGCCAGTTTGGACCACATGGAGTTTAAACGCTTTCGCTTCCTGGTCATCGAAGCCATTCTGGCCACTGACCTCAAGAAACACTTTGATTTCCTGGCCGAATTCAACGCCAAGGTGGGTGATGACGGCTGCTCAGGGATCGACTGGACCAATGAGAACGACCGTCTGCTGGTCTGTCAGATGTGCATTAAGCTAGCAGACATAAACGGGCCGCTGAAATGCAAGGATCTTCATTTGCAGTGGACGGAGGGCATCGTCAATGAGTTTTACGAGCAGgGTGATGAAGAGTCCAGTCTCGGTCTTCCCATCAGCCCCTTCATGGACCGCTCAGCACCTCAGCTGGCCAAACTGCAAGAGTCCTTCATCACACACATCGTGGGTCCTCTGTGCAGCTCGTATGACTCTGCGGCGCTCATGCCTGGCCGCTGGGTCCACCCTCTGCCCAAAGATGGAGATGAGGTGGAGGACGAGAGCGAGGAGGAGGATGAGGACACAgcggaggaggaggaagaggacgcCTCCACCAGCTCTGAACTCTCCCAAAAACCAGCACCTAAGAAACGAAGGAAAGtcttctgccagatctcccatcACCTGCTGGAGAACCATGAGATGTGGAAGAAGGTCATTGCAGAGGAGTCCCAGAGCCAGACTGAAGGGGAGGACACCACCCCTGAGCCAATCCTGGCCAtcgatgaagaggaggaggagccagGGAGCAAGGAGGAGCCAACGGATGACCAAGGGGAGGGGTCAACAGAGGAAGAGGAGGGACCCGTACCTGAAGACACGCATGAAACACAGGAACCAGATGGCGAGACTGTAGAGGAAGCAGATGAGAAAAACACAGAGACTGTAGAAGACATTGAGGGAAAACAAGACGAAGACCAGAAAGATCCAGAATGA

Function

GO:

id name namespace
GO:0043951 negative regulation of cAMP-mediated signaling biological_process
GO:0001556 oocyte maturation biological_process
GO:0019933 cAMP-mediated signaling biological_process
GO:0019934 cGMP-mediated signaling biological_process
GO:0060282 positive regulation of oocyte development biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko04024 cAMP signaling pathway
ko04022 cGMP-PKG signaling pathway
ko04924 Renin secretion
ko05032 Morphine addiction

ZFIN:

id description
ZDB-GENE-041210-23 Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in several processes, including cyclic-nucleotide-mediated signaling; negative regulation of cAMP-mediated signaling; and positive regulation of oocyte development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in oocyte and oocyte stage V. Human ortholog(s) of this gene implicated in hypertension and brachydactyly syndrome. Orthologous to human PDE3A (phosphodiesterase 3A).

Ensembl:

ensembl_id ENSDART00000160308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057310 lncRNA downstream 85982 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057988 lncRNA downstream 273132 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA downstream 273132 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057309 lncRNA downstream 355445 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00055164 lncRNA downstream 700344 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057990 lncRNA upstream 383313 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00057991 lncRNA upstream 438684 3306145 ~ 3308415 (-) True XLOC_028428
TCONS_00057992 lncRNA upstream 524760 3392221 ~ 3405250 (-) False XLOC_028430
TCONS_00055199 lncRNA upstream 528861 3396322 ~ 3405050 (-) True XLOC_028430
TCONS_00057993 lncRNA upstream 540250 3407711 ~ 3415152 (-) True XLOC_028431
TCONS_00055184 mRNA downstream 25279 2674898 ~ 2727573 (-) False XLOC_028423
TCONS_00055186 mRNA downstream 25289 2675124 ~ 2727563 (-) False XLOC_028423
TCONS_00055188 mRNA downstream 25361 2705703 ~ 2727491 (-) True XLOC_028423
TCONS_00055187 mRNA downstream 33724 2675185 ~ 2719128 (-) False XLOC_028423
TCONS_00055182 mRNA downstream 115142 2548783 ~ 2637710 (-) False XLOC_028421
TCONS_00055191 mRNA upstream 55738 2923199 ~ 2945306 (-) False XLOC_028425
TCONS_00055192 mRNA upstream 59368 2926829 ~ 2945306 (-) True XLOC_028425
TCONS_00055193 mRNA upstream 80602 2948063 ~ 3023182 (-) False XLOC_028426
TCONS_00055194 mRNA upstream 80602 2948063 ~ 3145359 (-) False XLOC_028426
TCONS_00055195 mRNA upstream 89576 2957037 ~ 2964680 (-) False XLOC_028426
TCONS_00055185 other downstream 66762 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 590128 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 1804010 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1944399 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 2067433 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055220 other upstream 1625105 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 1678748 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 2062950 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 2502595 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 3569303 6436764 ~ 6451732 (-) False XLOC_028490

Expression Profile

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