RNA id: TCONS_00055193


Basic Information

Item Value
RNA id TCONS_00055193
length 4358
RNA type mRNA
GC content 0.53
exon number 24
gene id XLOC_028426
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2948063 ~ 3145359 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACACTTTCTCATAAACAGGGGATTTTAAACACAACATGCTGAAGTTCTGCACCACCTCTCGCTCCAGCCACAATGAGCGAAAGGTGACCTGCAAGCATCCCGTCAGCGGCGTCCCGTCACAAGACAACTGCATCTTTGTGGTCAACGAACAACCAGCGACCAAAGCACCAGAGGCGGAGAAGAAGGAGCGTCCCACCAGCACCATGAGCGAAGCCTCAAACTACACCGGCGGCTCCGACTACACCACACATCCCAGCAGCCCCACAACCAGACCATCCCGGTCCTCAAAGAAAGTGCACAACTTTGGGAAAAGGTCCAACTCCATCAAGAGGAACCCCAATGCACCTGTGATCAAAAACGGCTGGCTTCACAAACAGGACAGCACTGGGATGAAGATGTGGAAGAAGAGATGGTTCGTTCTGTCTGATATGTGCCTCTTCTACTACAGAGATGAGAAGGAAGAGGGGATTCTGGGAAGCATCCTCCTGCCTAGCTTTCACATCTCCATGCTGTCCGTGGACGACCATATTACCCGGAAATACGCCTTCAAGGCGACGCATCCAAACATGCGGACGTATTATTTCAGCACAGACACAGCCAAAGATATGGAGTCCTGGATGAAAGTGATGTCGGATGCGGCGATGGCTCACAGCGAGCCAATCAGAAGGCTTGAGAAGGTAAAGCTGGACTCTCGCGTTCCTCAGGAGATGAACAACATGCTGAACCACCGCGTCTTGACACGACCCGAGATCCAAAACAACGAGAGGAACCGCGAGACGCTCCGCCAAGAGGACAAGAAGAGCAAACCATCAGAGAAACCTcagaaagacaaagacagagtcagCATGCAGAAAGACGGAGAGCGCTTCAGTGAAAACTACACTCACCGGCAGAAAGACGGCGAGCGCTACATGCTGCAGAAAGACCTGGAGAAATTTGTCCTGCAGAAAGACGGAGAGAAGTACGCCGTGCAGAAAGAAGGCGACAAATATCTCCTGCAGAAAGACGGACACAAATACACAGTGCACAAAGACGGAGACAAATACACGCTTCAGAGAGAACTCGAGATGTACAATCCACCAAAAGACGCGGAGAAGATCCCGCAGAAAGATGCAAGGTTTAGTCTGGTGCAGAAGGAGCTGGAGAAACCCGTCCCGCCACCGCGATCTGAGGAAAAATACGGCTTTCAGAAAGAGGGCACCATTGAGCGTCCGCTAACTAAAATAAATAGCATTAAACTGCAGCCGGCTCAAGCAGCCGCCATCGCTGCAGCCGTTTCATCCTCTAGGATGATGCAGAAACAGGTTAATGGCTCCGGGGAACGAGCGGGAGACAGAAGTCCTGGAGATTTGAGTACTGTGAGGACGAGCGTCCCGCCACCAACGCAGCCGGCTCCAGAACCAGAGCGAAGCCTCAGCAGAACCAGCTCAATGCAGCAGCTGGAGCAGTGGGTTCGCACACACCGCACACGAGCTCCAGACGACGACACCAGGAGCATTACGTCCTACCAGACCCTGCCAAGGAACATGCCGAGCCACCGGGCGCAGATTGTCCCTCGCTACCCTGAGGGCTACCGCACTCTGCCCCGAAACATGCTGCGTCCGGACAGCATCTGCAGTGTAGCAGGATCAGTGTACGACCGAGCGCTTCAGCCCAGCACGCAGGAAAAGCGGCGCTCCATCCGAGATGACACCATGTGGCAGCTGTACGAGTGGCAGCAGCGGCAGGCGCACAGTCGGCTTGGGTACGGGACGCTGCCCAGTCCCAAAACTATGGGGCAGATCGCGGAGTCCATCCCCACGTCCCCATCCCATGGCTCTCTGGCCGGATATCACACCTTCTCCCCGAACAGACCGCTCAACCCTGACTCGCGCTCGGAGCTGTCTTCGCCTGTGTTTCGTGGAGACGTGACCATCGAGCGACGCCACCGACCACACCTGTCCAAGTACTCCTATCCTGCGGAACGCAGAGCTGCTCCTCCCGCACAGAACATCACTGCACAGTCTCTTCAAGGCAAAACGATGAGTCCTGAAGAGTACAGAGAAAACACTTACATGTACAGGCCGGAGGAGCTCGATGTCGACGCGAAGTTAAGTCGGCTCTGTGAGCAGGACAAAGTAGTGCGAACTCAAGAAGAGAAACTGCAGCAGCTCCACAGAGAAAAGCACACACTGGAGACGGCGCTGCTCTCCGCCAGTCAGGAGATCGAGATGAGCTCTGAAAACCCAGCGGCGGTCCAGAGCGTGGTCCAGCAGAGGGACGTCCTGCAGAGTGGCCTGCTGAGCACCTGCAGAGAGCTGAGCCGCGTCAGCACTGAGCTGGAGCGAAGCTGGAGAGAATATGATCGACTAGAGGCCGATGTTACACTTGCCAAAACTAACCTGCTGGAGCAGCTGGAGGCCCTCGGCAGCCCACAGACGGAGCCGCCCAGTCAAAAGCATGTTCAGATCCAGAAAGAGTTGTGGAGAATTCAGGATGTGATGGAGGCGCTGAGCAAGAACAAACCCAAGAGAAACCCTGAACCCAgTTTTCCTGGTGCAAACCCTCTGTCAACCCTGCATAAAAGTGAAGGCCCGGATTACAGGCTGTATAAGAGTGAGCCGGAGCTGACCACAGTAGCCGAAGTCGACGAGAGTAACGGTGAAGACAAATCAGAGCAGACAGCAGAGAAAGAGCCGCCCGGCGTCACTAAAGGTATAGTTTACCCGGTGGGAGTGGTCAGTCCCAGAACTAAATCACCCATGCCCGAGTCCTCCACCATCGCCTCCTACGTCACCTTGAGGAAGACCAAAAAACCTGATCCCAGAACATGTCAGCCGCAGGACCGTCCGCGCAGCGCTGTGGAGCAGATGAGCAGTGGTGCTGAAGTGGGCCGAACACGCATGAGTGTGGAGGAGCAGATGGAGAGAATCAGACGacaccagcagggggcgctgagAGAGCGCAGGAGAGAAGATGGCTCTCTATCCCGCAGCCTGTCCTTCACTAAGGACAGCACATACTACACACTGCAGGCACGTAAGAAGAGTCCGGTGATCTCTCCAGACGAGCAGGACGAGCGCAGAGACATGACGCCTGTGGAGCgagacacaaaacacacaaaacaccctGACGCAGAGGAAAACTGCAGAGACACTAAGGAGCAGCTGCCAGCACACACCCACCTGGAGATTAAGGACAAAGCATCTGTGACTCGCTCGGTCTCCATGAAAGAGTCTCTCCTGAAGAGTGTGAGTCCCAAACCCGTGCTGAAGCAGGACGAATCTGAGTGTAAACTGGAGTACGACAGAAAGCTGGCCACTCAGAACAGcCTGCAGACGGCAGTGATGGTGCGTGTGGGCACTGAGGAGGATGAAGAGGATGAAGAAGAGGAGCAGAAAGACTCAGTTCAGCAGCAGGAGGACTCTTATGAGCTCAGCAACAGCAAACACAGCACACTGATCTCAGTGAACAGTGTGTCGACTCCTCCTCAATCTCCAAgctcctcctcctctcctccgCCTCCACCCTCCCCTCCACAGCTGACGGACGGGTCACActtcatgtgtgtgtgagaggagacTCATGCACcaCATCATGTGACAGGAAGAACACATCATCACCATCGTCATCATCAGACTGGAAGTCTCGCCCCCTCCTTCATCAGCTgcccaacacaaacacaacagcgtCCAGGCCTCAGTTCAACAGCGACTGATTCCTAGTGGTTATCATCCCTATTATTTATACTCCTCCAGTTCTTAAGGTGCTTTCACCCCCAGACGGATGTTCTCCAAACCTCCCCCCGTTGGCCTTCATCGTTTGCTTTGTTTTCTATGGATTTTAACCAGGTTTTAGCCAGTGTTGCTCGATGAGGTTTTCTAGTACTCATATCTTTTTTGCACTGGACGACACACTCATGGTTGGTTTTACTATGTATAAAACGCTGTACAGCTCTCAATAAGGTGCCCATGGACAGCAGCACATGTACGATGACCTGTATGTTTGATAGTCCGCAATAGACACACACTGTTTTCCCGACACACTCATGAATGTCCagcttctgttttatttttctatgGCTGAGATATATTTAATAGAGAGCTTTATGAGGAGATTGTTTTGCGAGTTCGGTTGTGAGAGACACGTGGACAGCGGTTGACAAAAAGCAATAAGCAGGATTTGTCTGTGTTTCTCTTCGATGTATAAAGTGTAAAGTTGATGATGTAAATATACTGTACACCGGACTAAATGAGCAGAGCCGAGCCGAGCGGAAGAGCTTGTGTATCAGAGTCAATATGCAAATGTTCATATTTCATCTGTTTTATATCATGTCCAATAAATGTTGATGTTCTTATATATGCCAAGAGATTTACC

Function

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0070273 phosphatidylinositol-4-phosphate binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function
GO:0010314 phosphatidylinositol-5-phosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-25 Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to be active in cytosol. Orthologous to human PLEKHA5 (pleckstrin homology domain containing A5).

Ensembl:

ensembl_id ENSDART00000127894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057310 lncRNA downstream 281193 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057988 lncRNA downstream 468343 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA downstream 468343 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057309 lncRNA downstream 550656 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00055164 lncRNA downstream 895555 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057990 lncRNA upstream 227592 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00057991 lncRNA upstream 282963 3306145 ~ 3308415 (-) True XLOC_028428
TCONS_00057992 lncRNA upstream 369039 3392221 ~ 3405250 (-) False XLOC_028430
TCONS_00055199 lncRNA upstream 373140 3396322 ~ 3405050 (-) True XLOC_028430
TCONS_00057993 lncRNA upstream 384529 3407711 ~ 3415152 (-) True XLOC_028431
TCONS_00055191 mRNA downstream 2757 2923199 ~ 2945306 (-) False XLOC_028425
TCONS_00055192 mRNA downstream 2757 2926829 ~ 2945306 (-) True XLOC_028425
TCONS_00055190 mRNA downstream 79951 2752852 ~ 2868112 (-) True XLOC_028424
TCONS_00055189 mRNA downstream 80602 2752852 ~ 2867461 (-) False XLOC_028424
TCONS_00055186 mRNA downstream 220500 2675124 ~ 2727563 (-) False XLOC_028423
TCONS_00055198 mRNA upstream 319989 3343171 ~ 3353595 (-) True XLOC_028429
TCONS_00055201 mRNA upstream 769768 3792950 ~ 3804493 (-) False XLOC_028433
TCONS_00055202 mRNA upstream 769768 3792950 ~ 3805075 (-) False XLOC_028433
TCONS_00055203 mRNA upstream 769768 3792950 ~ 3805992 (-) True XLOC_028433
TCONS_00055204 mRNA upstream 783076 3806258 ~ 3811017 (-) True XLOC_028434
TCONS_00055185 other downstream 261973 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 785339 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 1999221 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 2139610 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 2262644 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055220 other upstream 1469384 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 1523027 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 1907229 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 2346874 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 3413582 6436764 ~ 6451732 (-) False XLOC_028490

Expression Profile

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