RNA id: TCONS_00055198


Basic Information

Item Value
RNA id TCONS_00055198
length 4762
RNA type mRNA
GC content 0.40
exon number 11
gene id XLOC_028429
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 3343171 ~ 3353595 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAACGCGCTTTCTGGGTGATCgcgtttattttgtattaataacAACGGCTGAAATAACAGAGTTTATACTTATTCGTAGTCTGTATTGGCTCTCACTGCATCCATGTATCAGTATTTACTCGACCGCGTTCAGGGTCATTGGCTCTGCATTTGCTGAACGCATTGGTTATGGAACAGCAAGCCAGTGATGATGAACCACCAGTAGTTCGCAGAGAGGAAAACAAGAGGAGAAGGAGAAGGATGAAAGCATTTACATCTGCCTCGGCTGTCTCGATGGAACATATAGCTGTTGAGTTTGTACTTCCTACCAccaataaaaatagcaaaacttTAGACACATTGCAACTAGACGTGACTGGAAATTGGACGGTAGAGCAGGTGAAGGTTCAGCTTTGGCACAGAGCGGTAACCTCTAAGTTATGCCCTGAATTTTACCAAAAATACTCTCCAGACTACTGCATCCTGCTTTATCAGAAGAAAGGCAACTGGTATGAAATCTATGACAAACAGCAGGTATTCCAAACCCTTGACTGCATTAGATATTGGAAAGCGTTGAGGAAAGATGTAGGGAAAATCCATCTGGTTGTTCGGCAACAACCTGCTGAGGATTCGCTTCAGTACCAACGATTTCTCAACCATCTAATTGGATATGATGTCACCGATGTCAGCAACGTCCATGACGATGAACTGGAGTTTACACGAAGAAAGCTACTGACCCCTCGGAAAATTGAGCTATCTGATCGGGATCCCAACCTTTATTCGATGGATCCCTGGATGACCACAACACCAATGCCTGAATACTTGCTCAGCAAAATAAGCAACAATCATATCCTGATGGTGATACACAAAGAGACAACAAGCCAGACTATTAAGGTGTCTATAGATGATACACCAGTCCAGGTACTTCAAAGCTTCTTCGCCAAGATTACTAACAAGCGAGCACTTTTAGGCATATCTGAAGACGTCAGTGAATCAGATTTTGTCTTAAGGGTTTGCGGAAGAGAGGAATACCTATATGGCAACAACGCAATTAAAGATTTCCACTGGATCAGACAGTGTCTTAAAAACGGTGAAGAGATTCATCTAGTTTTAGAGCACCCCCCAAACCCAGAACAAGATGTGGTTCAAAAAGAGGACTGGTCTCAGGTTGATGACTGCACTGGTGTCGCTGGTACTCACGAACAACTAACCATAACTGAGAAAGACCATGAAAAGGTGTTCACCATCTCCCTTTGGGACTGCAATCGTAAATTCAGGGTGAAGATCTTGGGTATTGACATTCCAGTACTCCCGCGTAATTCAGAATTGATCGTGTTTGTGGAGGCCAGTATTTTCCATGGACAACAACTGCTGGCTCAAGAAAGGACAAGCTCAAAACCATTCACAGAAGAGGTGATTTGGAACACCTGGTTGGAGTTTAATATAAAGATCAAGGACTTACCCAAAGGTGCCCGACTTAGCCTGCAAGTGTCGTGTGGAAAGGCACAGACACAAACATCAAAGGAAACTGAATGTAAAAACAAGTCTCGCTTACTCTACTATGTCAACCTGTTATTAGTTGATCACCGCTCCCTACTTAGACAAGGTGAGTTCATCTTGCACATGTGGAAGATGCCTGAGAAGAGTGAAGACAACAGCAGTGTAAATGCAGATAAGCTTACATCCGCAACCAACCCAGACAAGAACAACTCAATGGCTGTTGCTATTCTCCTGGACAAGTACTGCTACCCTGTGGCTCTTCCCAAGAGCAAAGATTCTCCTGATATTGAAGGCGAAAGAGGGCAGAGAGAGATGCCCAACCATCTACGCAAACAATTTGAGCAGATTATTGCTACAGACCCTTTGCACCCGCTCACCTCCGAAGATAAAGAGTTGCTCTGGCACTTCCGGCAGGAGTGCATGAGGGATCCGAAAGCATATCCGAAGTTTCTTTCCTCCGTTAAGTGGGGCAAACAAGAGGCTGTGGCCATAACGCATTATCTTCTGGAAAGGAGCACCATATGGGACCGAAGCGTGCTTGATGTGGGTTTGGTCTTACAATTACTGGACTGCCACTTCTCTGATGAAAACGTGCGCACTATAGCTGTCCGGAAGTTGGAGACTTTGGGAGATGATGATGTCCTGCGGTATCTTCTGCAACTTGTCCAGGCTGTAAAATTTGAACCATACCATGACAGCGCACTTGCAAGGTTCCTTCTGAAACGTGCACTCAGAAGCAAGCGGATCGGCCATTTCTTGTTCTGGTTTTTAAGAAGTGAAATTGCCCAATCCATGCACTATCAGCAGAGGTATGCTGTAATACTGGAAGCGTATCTCCGTGGCTGTGGTGAAGAAATGCTACAGGACTTCAGGAAGCAGGTGGAGATCACAGAGGCCTTGCAAAAGGTCGCTCGTGAGATTAAGCAAATATCTGCTGAGAAGTATGACATATCAGCACAAGTTGTTTTTCAGCTGCGCCAGAAACTGGAAGGTCTGCAAGTCTTAGGGTTGCCAGACAGCTTTAAAGTGCCTTACGATCCGGGCCTACGAGCAGGGGCACTTGTGATTGAGCAATGCAAAGTTATGGCATCCAAGAAGAAACCCTTGTGGCTGCAGTTCAAACGAGCCGATCCCACCACTTTGTCGAGCGACACAATTGGGATAATCTTTAAAGATGGGGATGACCTTCGTCAGGACATGCTGATATTACAGATTCTACTTATTATGGAGTCTATCTGGGAGCTGGAGTCATTAGATCTTTCCTTGTTACCTTACGGCTGCATTTCCACTGGAAATAAAATTGGAATGATTGAAATAGTGAAGGATGCCACTACCATTGCAAACATTCAGCAAAGCACTGTTGGGAACACCGGAGCTTTTAAAGATGAAATCCTCAGCCAGTGGCTTCGAGAAAAGTGTGTCAATGAGGACAAGCATCAACAGGCTGTAGATCGCTTTGTGTTCTCGTGTGGAGGGTATTGTGTGGCGACTTATGTCCTTGGCATTGGTGATCGTCACAATGACAACATAATGATCACTGAGACAgGTAATCTCTTCCACATTGATTTCGGACACATACTTGGCAACTACAAGAGTTTCTTGGGAATAAGCAAGGAGCGAGTTCCCTTTGTGCTGACTCCAGATTTCCTCTACCTGATGGGCACAACAGGAAAGAAAAGCAGCCCTAATTTCCTCCAGTTTCAGAATGTCTGTCTGAAGGCCTACCTGGCGCTGAGACACCACACCAACCTGCTGATCATCCTGTTCTCCATGATGCTGATGACCGGGATGCCTCAACTCACCAGCAAAGAGGACATAGAGTACATTCGGGAGGCGCTGACAGTAGGACGCTCAGAGGACGAGGCCAAACAGCACTTCTTGGACCAAATTGAGATCTGTCGGGACAAGGGTTGGACGGTGCAGTTTAACTGGTTCCTACATTTGGTGCTCGGCATTAAACAGGGTGTGGAGAAACGGTCAGCTTGAAGACCGACCAAAGGAAATCTGCATCTGTTTTGAAAAGAtctgctgtgtttttattttgccaggtatatttattgacattttgagCAGATGCAAAAATAGGTAACGCActgttctgctttttttttttaactaatgacCAAAAAACTATGTAGTTATTAAATAACGcagtaaatgtaaaatctaaaaagtaaaaataataataataaaaagcctttattcctCTTGTGCTTCAAGATTAATAGCATCAATATAATTCAACCAATGTTTACATGTTTTGTACACATATTTTTAAGATTTTcttaatgaaaacttttttttttcagttttaaatgcaaaaaatatatatatatatatattttatgcatcTATGACCTgcagtttttttatattacaaagtttttttaatgtaattttatagttgtattattatttaatgcatttacatcACGCATTGCATTGGTTTTAAATGCACAATTGCATTATTTCCTATTGCAGGCTTGATATTATCTTGCATATTCATGAAATATAGATTTCTTGCTTGTTTTATGAGATTGGATCATGTGAAATGTCTGTAAATATAGCAGATTTGTGGAGAAAAGTTGATGTTCTGATAGTCATGTGATCTTTTTacaaagttattaaaataaatgtcaattttagACATAGATTAAaacataatgttttatatttatctttaaatttaatactgataataattaGGCAGAGTATTTGTCTGGTCATCTAATTTCAACAGAGCAACCCTGTAATATATTTGATGTAATAAAGAATCCTTGTTATTTTCTATAGACACAttttttataaagcaaaaagCTCTTAATGGCACCaagtattttgtttttgatttatttattttattttttgtagtgtcCTGGTTgaaactttacatttaaattaattttaacataaaattaattgcgttttaaattaataaattgacaTGTTTTAGTCTCCCTTGATTAATTTATTCAGTAACTAAAAGTGTTCAGTAATGATACAGGTCTAGTAGAGGTCATGTGACATGATCACCGATATgaagaataatttaaatatacatataagaAGAATCAGTGAAACTGCTGATTACAATTATATAAATTGgacatatttaatataatgtcTAACCCACTAAATGTGAGTACTGACGTGAGATTGCTTTCATCATGTATGGATTACCAATATAGTACACGTTTCCATTTCactattgtactttttttttaaatgtgtattgctttctttatataataaatttctattaaaatgatttacaaAAAATA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0016477 cell migration biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0014065 phosphatidylinositol 3-kinase signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0005943 phosphatidylinositol 3-kinase complex, class IA cellular_component
GO:0005944 phosphatidylinositol 3-kinase complex, class IB cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0052742 phosphatidylinositol kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko04371 Apelin signaling pathway
ko04072 Phospholipase D signaling pathway
ko04022 cGMP-PKG signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04611 Platelet activation
ko04062 Chemokine signaling pathway
ko04921 Oxytocin signaling pathway
ko04261 Adrenergic signaling in cardiomyocytes
ko04725 Cholinergic synapse
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05132 Salmonella infection
ko05145 Toxoplasmosis
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-2532 Predicted to enable 1-phosphatidylinositol-3-kinase activity and 1-phosphatidylinositol-4-phosphate 3-kinase activity. Acts upstream of or within neutrophil chemotaxis. Predicted to be part of phosphatidylinositol 3-kinase complex, class IA and phosphatidylinositol 3-kinase complex, class IB. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in autistic disorder and swine influenza. Orthologous to human PIK3CG (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma).

Ensembl:

ensembl_id ENSDART00000009076

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057991 lncRNA downstream 34756 3306145 ~ 3308415 (-) True XLOC_028428
TCONS_00057990 lncRNA downstream 85607 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00057310 lncRNA downstream 676301 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057988 lncRNA downstream 863451 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA downstream 863451 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057992 lncRNA upstream 38626 3392221 ~ 3405250 (-) False XLOC_028430
TCONS_00055199 lncRNA upstream 42727 3396322 ~ 3405050 (-) True XLOC_028430
TCONS_00057993 lncRNA upstream 54116 3407711 ~ 3415152 (-) True XLOC_028431
TCONS_00055200 lncRNA upstream 92416 3446011 ~ 3456102 (-) True XLOC_028432
TCONS_00057994 lncRNA upstream 460023 3813618 ~ 3819984 (-) True XLOC_028435
TCONS_00055194 mRNA downstream 197812 2948063 ~ 3145359 (-) False XLOC_028426
TCONS_00055197 mRNA downstream 279070 3002438 ~ 3064101 (-) True XLOC_028426
TCONS_00055193 mRNA downstream 319989 2948063 ~ 3023182 (-) False XLOC_028426
TCONS_00055196 mRNA downstream 367710 2963055 ~ 2975461 (-) False XLOC_028426
TCONS_00055195 mRNA downstream 378491 2957037 ~ 2964680 (-) False XLOC_028426
TCONS_00055201 mRNA upstream 439355 3792950 ~ 3804493 (-) False XLOC_028433
TCONS_00055202 mRNA upstream 439355 3792950 ~ 3805075 (-) False XLOC_028433
TCONS_00055203 mRNA upstream 439355 3792950 ~ 3805992 (-) True XLOC_028433
TCONS_00055204 mRNA upstream 452663 3806258 ~ 3811017 (-) True XLOC_028434
TCONS_00055205 mRNA upstream 762183 4115778 ~ 4119396 (-) False XLOC_028439
TCONS_00055185 other downstream 657081 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 1180447 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 2394329 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 2534718 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 2657752 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055220 other upstream 1138971 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 1192614 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 1576816 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 2016461 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 3083169 6436764 ~ 6451732 (-) False XLOC_028490

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_03158972_03165320.mRNA True 3905 mRNA 0.44 10 CI01000066 3158316 ~ 3165320 (-)