XLOC_028432 (CU928073.1)


Basic Information

Item Value
gene id XLOC_028432
gene name CU928073.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 3446011 ~ 3456102 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055200
GAGCCTCGCACCATTGCGCGCGCTCTCCTCACTCACACGCGATCAAAACGAGCACAAAACACAACCAATACAGTTAACAACAACCTTTTCCATCCGAAAACtatgtaaacatttaataaaggTGAGCGGGATCATAACCGAGCCGCGTCTTCGCGATCCTCAGCCCGAACAACAAAACCATGACGCCATTTTCTGCAAAACAACAGCCTTCGGGGAGGAAACGCGACGCGTTTACGCGTCTTAAACACACACAAGTCGCTTCATCTTATGTTTGAGATCCTAAAAGAAGCTTGTTGTTGTTCTCACCGATAAATTCCCGGAAGATCTTCGACTTTGGCTCTCTTGAGGTGCTCCTGGATGTTGCGTGACGCGTCCACGCGCATGAATGTGACTCTCTCCAGCACACGTGCACTATTGAGCAAACACTTGAAATCCATCAGGGTGCCGTGACCTAGAAGGGAAAGGAAGAAGCCCTGTAGGGAAAGTAAACGCATATGCTGAGACTCAACCGTAGCGGGGACAGAGGCAGCGGTGGATAAAGGCAGGACAGACACAGTGCTGGAGTCCCATCAGGAACCACGGGACATCCAGGAGCTTCCAGCGTCACCACAGATTTGCACTGCATCAGTGAGGGACCCTTGCCTGCGAGAGAGATCAGGTATTTAGCATACGTGCATGAATTTGTCTTATATGAATTTCATTATCGTACAGTTTACGTTTTGCTTACAGTTTCCCGGTTTAGTGTTGACACTATGTGGATAAAATGACTATAAAGAGCGTAAACAAATCAAAGTTGACCTGCAAACTGTGCATTGCAGGCATGCTAAGAAAAATCAGGCATGCACAATAACTTGTAATTGTTTTTGTACTACTTATAAGTTGTCAAAcctaaaagaaaaggaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0045165 cell fate commitment biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097073

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055200 True 903 lncRNA 0.46 2 3446011 3456102

Neighbor

gene id symbol gene type direction distance location
XLOC_028431 NA coding downstream 30859 3407711 ~ 3415152 (-)
XLOC_028430 NA coding downstream 40761 3392221 ~ 3405250 (-)
XLOC_028429 pik3cg coding downstream 92416 3343171 ~ 3353595 (-)
XLOC_028428 NA coding downstream 137596 3306145 ~ 3308415 (-)
XLOC_028427 NA coding downstream 188447 3250774 ~ 3257564 (-)
XLOC_028433 si:dkey-61f9.1 coding upstream 336848 3792950 ~ 3805992 (-)
XLOC_028434 si:dkey-61f9.1 coding upstream 350156 3806258 ~ 3811017 (-)
XLOC_028435 NA coding upstream 357516 3813618 ~ 3819984 (-)
XLOC_028436 NA coding upstream 364756 3820858 ~ 3821848 (-)
XLOC_028437 NA coding upstream 476431 3932533 ~ 3933160 (-)
XLOC_028422 NA non-coding downstream 779141 2664168 ~ 2666870 (-)
XLOC_028438 NA non-coding upstream 493124 3949226 ~ 3952125 (-)
XLOC_028441 NA non-coding upstream 691526 4147628 ~ 4157535 (-)

Expression


Co-expression Network