XLOC_028441


Basic Information

Item Value
gene id XLOC_028441
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4147628 ~ 4157535 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057313
GCGACACAGAGTGCAGAAATGGAGAGTAACGCGACTCACCTcagtgaagatacacacgtgtgtctgttgtgtttctgcTGCACATCTTTCCTCTTTCTGACGCTCCTCCACACACTCCTCCACATCCAGGCGGATTCACAGCTCCAGTAAAGGTATTTATGAGCTCATATTTCCAGTAGAGAGTCCagaaagtgtgtttgttgtgctgCTGCTCTGTCGCGTGTATGTTGGGGGAGGGACTTTCtgtagaaagcatttgattggccagATTTGGTGTAGAGTCCTCAATACAGTATGAGGAGACTTTAGAGGTAAATGatgatatttac
>TCONS_00057314
CATCAGCGAGCTGCTCTTTTAGCCTGAACACCTTTGACAACAGCGCCACAGATCATCACAGGTACACCGTTTTACTGGCGTCAAGTTGAGCTCCAGCAGATGACAGCTCAGTGACAGACTCATAATGTCAGTCAACAGCACATATTACAGCCCGACAGTGAAGAAAAGCGACACAAAGTGCAGACATGGAGAGTAACGCGACTCACCTcagtgaagatacacacgtgtgtctgttgtgtttctgcTGCACATCTTTCCTCTTTCTGACGCTCCTCCACACACTCCTCCACATCCAGGCGGATTCACAGCTCCAGTAAAGGTATTTATGAGCTCATATTTCCAGTAGAGAGTCCagaaagtgtgtttgttgtgctgCTGCTCTGTCGCGTGTATGTTGGGGGAGGGACTTTCtgtagaaagcatttgattggccagATTTGGTGTAGAGTCCTCAATACAGTATGAGGAGACTTTAGAGGTAAATGatgatatttac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057313 False 329 lncRNA 0.46 2 4147628 4152670
TCONS_00057314 True 496 lncRNA 0.47 2 4147628 4157535

Neighbor

gene id symbol gene type direction distance location
XLOC_028440 asb15b coding downstream 18441 4120570 ~ 4129187 (-)
XLOC_028439 lmod2b coding downstream 28203 4115778 ~ 4119425 (-)
XLOC_028438 NA coding downstream 195503 3949226 ~ 3952125 (-)
XLOC_028437 NA coding downstream 214468 3932533 ~ 3933160 (-)
XLOC_028436 NA coding downstream 325780 3820858 ~ 3821848 (-)
XLOC_028442 NA coding upstream 5290 4162825 ~ 4163876 (-)
XLOC_028443 NA coding upstream 21299 4178834 ~ 4229155 (-)
XLOC_028444 NA coding upstream 50055 4207590 ~ 4210464 (-)
XLOC_028445 cd9b coding upstream 77459 4234994 ~ 4261673 (-)
XLOC_028446 CU468826.1 coding upstream 163633 4321168 ~ 4374704 (-)
XLOC_028435 NA non-coding downstream 327644 3813618 ~ 3819984 (-)
XLOC_028432 CU928073.1 non-coding downstream 691526 3446011 ~ 3456102 (-)
XLOC_028450 FP102892.1 non-coding upstream 356903 4514438 ~ 4516508 (-)

Expression


Co-expression Network