XLOC_028439 (lmod2b)


Basic Information

Item Value
gene id XLOC_028439
gene name lmod2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4115778 ~ 4119425 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055205
ATGAGCACTCACTCTCACTTGAACCACTCGAAGGATCCCAGAACGCTCAAAACATCTGATGCACCAACGCTGAGACAAAACCAAGACTACCAAGAGGCCATGAGTACATTCGGCTACCGTCGGGAACTCAGTAAGTACGAGGATTTGGATGAAGATGAGCTGTTGGCTTCACTCACAGCCGAGGAGCTCCAGGAGCTGGAGAAGGAGTTGGCTGATATTGACCCAGATGACAATCTCCCTATCGGATTGCGGCAAAGAGATCAGACCGCCAAGACTCCCACCGGTACATTCAGTAGGGAAGCTCTGATGAAATACTGGGAAAATGAGACGCGAAAACTGCTGGAGGAGGAAAGGATTGGATCTACAAGCCCAGGAGAGAAAGACAAAGACAGCAGAGAAGAGGAGGAATGTGTTACAGAGAGTGACACTGAAGACTCTGGGGATGAAAAAGATGAGGTTGAAGAAAGTGAGAAAGACACAGAGAAATATAGAGAAGCTGAAGAAGACCGAGAAGAGGAAGAGGAAAGTGAAGCAGATGAACCAGTgacagaggaagaggaggaagaagaagaagaggaagaagatgaCAAGGAAGAACAAGAAGAACAAAAAGAAATCGACAACCATCCTAAAATGGGACACTCAATGGAGTGTAACACTCAACCGCAGCATTGTTGGTCCTCAAATAGTCAATCCAATCAAAGGCAGATAGGTGAACCAAAAGCCCAGAGTCAGGAGCCTGGTCGCACTTCAGGAAACCCCACGGTGGCTGATGAGGTACTGGAAAAGGTCCTCAACAATGACCCAGAAACCACAGAGGTCAACCTCAACAACATTGACAACATCTCCCAAGACACTCTTATCCGATTTGCAGAAGCCTTACGCTCTAACGCACAGGTACGCGTCTTCAGCCTTGCCAACACTCATGCTGATGACCAGGTGGCTTTTGCCATTGCCAAGATGCTGAGAGAAAACCGAAACATCACAAACCTTAACATCGAGTCCAACTTTATCACAGGTAAAGGTATTCTGGCTCTGGTGCAAGCGATCACCCAAAACAATACTCTGACAGAAATGCGATTTCACAATCAAAGGCACATATGTGGAGGTCAGGTGGAGATGGAGATTGTAAAGTTACTAAGGGAAAATACCACGCTAATAAAGTTGGGCTACCAGTTCGACCTTCCAGGCCCACGTATAAGCATGACAACCCTTCTCACCCGCAATCAAGACCTCCAGAGACAGAAGAGAATGCAAGAGCTGCGTCTGCAGAATGGAGGTACAGCAACACCCACAAATCCAAGAACTGTTGCTCTTCAGAAGAGCACGAGCACTTCTTCTCCTCACAGCTCGCCTCGGAGTTCGCCATGGTCATCTCCAAAGCTACCACATGTTGACATGGCCAAGAAAAATGCTCCCCCTGCtcctccaccaccaccaccacctccaccacctcctcctcctccacccccAAAAGCCTCCCTCTCAGAAAATAAACCTCCCTCCAGAATGATTGCTGAGGTGATCAAAAGGCAAGAGGAGACTTCCAAGAAACAGCAACATGGTCCCACCAAATCCAAATCCAAAAAGGGCAAAAAGAGGCCTCCAAATCAAACAGAGACGGACAGCATATTAAAGGAACTTAAGAACGCTTTGAGACCCATCAATGACAGAGAAAACTCCAGACCATCCACACCTCAGCGCTGTGCTCATGATGAACTCATGGCCGCCATCAGAGGCAGCAGCGTCAGAAATCTCAGAAGGGTGGAGGTTCCTAAATATCTTCAGTAA
>TCONS_00055206
AAGACCCCTCCAGCTGCCCACCACAGCAGATGAGCACTCACTCTCACTTGAACCACTCGAAGGATCCCAGAACGCTCAAAACATCTGATGCACCAACGCTGAGACAAAACCAAGACTACCAAGAGGCCATGAGTACATTCGGCTACCGTCGGGAACTCAGTAAGTACGAGGATTTGGATGAAGATGAGCTGTTGGCTTCACTCACAGCCGAGGAGCTCCAGGAGCTGGAGAAGGAGTTGGCTGATATTGACCCAGATGACAATCTCCCTATCGGATTGCGGCAAAGAGATCAGACCGCCAAGACTCCCACCGGTACATTCAGTAGGGAAGCTCTGATGAAATACTGGGAAAATGAGACGCGAAAACTGCTGGAGGAGGAAAGGATTGGATCTACAAGCCCAGGAGAGAAAGACAAAGACAGCAGAGAAGAGGAGGAATGTGTTACAGAGAGTGACACTGAAGACTCTGGGGATGAAAAAGATGAGGTTGAAGAAAGTGAGAAAGACACAGAGAAATATAGAGAAGCTGAAGAAGACCGAGAAGAGGAAGAGGAAAGTGAAGCAGATGAACCAGTgacagaggaagaggaggaagaagaagaagaggaagaagatgaCAAGGAAGAACAAGAAGAACAAAAAGAAATCGACAACCATCCTAAAATGGGACACTCAATGGAGTGTAACACTCAACCGCAGCATTGTTGGTCCTCAAATAGTCAATCCAATCAAAGGCAGATAGGTGAACCAAAAGCCCAGAGTCAGGAGCCTGGTCGCACTTCAGGAAACCCCACGGTGGCTGATGAGGTACTGGAAAAGGTCCTCAACAATGACCCAGAAACCACAGAGGTCAACCTCAACAACATTGACAACATCTCCCAAGACACTCTTATCCGATTTGCAGAAGCCTTACGCTCTAACGCACAGGTACGCGTCTTCAGCCTTGCCAACACTCATGCTGATGACCAGGTGGCTTTTGCCATTGCCAAGATGCTGAGAGAAAACCGAAACATCACAAACCTTAACATCGAGTCCAACTTTATCACAGGTAAAGGTATTCTGGCTCTGGTGCAAGCGATCACCCAAAACAATACTCTGACAGAAATGCGATTTCACAATCAAAGGCACATATGTGGAGGTCAGGTGGAGATGGAGATTGTAAAGTTACTAAGGGAAAATACCACGCTAATAAAGTTGGGCTACCAGTTCGACCTTCCAGGCCCACGTATAAGCATGACAACCCTTCTCACCCGCAATCAAGACCTCCAGAGACAGAAGAGAATGCAAGAGCTGCGTCTGCAGAATGGAGGTACAGCAACACCCACAAATCCAAGAACTGTTGCTCTTCAGAAGAGCACGAGCACTTCTTCTCCTCACAGCTCGCCTCGGAGTTCGCCATGGTCATCTCCAAAGCTACCACATGTTGACATGGCCAAGAAAAATGCTCCCCCTGCtcctccaccaccaccaccacctccaccacctcctcctcctccacccccAAAAGCCTCCCTCTCAGAAAATAAACCTCCCTCCAGAATGATTGCTGAGGTGATCAAAAGGCAAGAGGAGACTTCCAAGAAACAGCAACATGGTCCCACCAAATCCAAATCCAAAAAGGGCAAAAAGAGGCCTCCAAATCAAACAGAGACGGACAGCATATTAAAGGAACTTAAGAACGCTTTGAGACCCATCAATGACAGAGAAAACTCCAGACCATCCACACCTCAGCGCTGTGCTCATGATGAACTCATGGCCGCCATCAGAGGCAGCAGCGTCAGAAATCTCAGAAGGGTGAGTATCACAAAATCTG

Function

symbol description
lmod2b Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Orthologous to human LMOD2 (leiomodin 2).

GO:

id name namespace
GO:0051694 pointed-end actin filament capping biological_process
GO:0006936 muscle contraction biological_process
GO:0007015 actin filament organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-356 Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Orthologous to human LMOD2 (leiomodin 2).

Ensembl:

ensembl_id ENSDARG00000045864

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055205 False 1791 mRNA 0.48 3 4115778 4119396
TCONS_00055206 True 1812 mRNA 0.48 2 4117002 4119425

Neighbor

gene id symbol gene type direction distance location
XLOC_028438 NA coding downstream 163653 3949226 ~ 3952125 (-)
XLOC_028437 NA coding downstream 182618 3932533 ~ 3933160 (-)
XLOC_028436 NA coding downstream 293930 3820858 ~ 3821848 (-)
XLOC_028435 NA coding downstream 295794 3813618 ~ 3819984 (-)
XLOC_028434 si:dkey-61f9.1 coding downstream 304761 3806258 ~ 3811017 (-)
XLOC_028440 asb15b coding upstream 1145 4120570 ~ 4129187 (-)
XLOC_028441 NA coding upstream 28203 4147628 ~ 4157535 (-)
XLOC_028442 NA coding upstream 43400 4162825 ~ 4163876 (-)
XLOC_028443 NA coding upstream 59409 4178834 ~ 4229155 (-)
XLOC_028444 NA coding upstream 88165 4207590 ~ 4210464 (-)
XLOC_028432 CU928073.1 non-coding downstream 659676 3446011 ~ 3456102 (-)
XLOC_028446 CU468826.1 non-coding upstream 201743 4321168 ~ 4374704 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_03649007_03654018 LMOD2 coding CI01000066 null 3648932 ~ 3654018 (-)