RNA id: TCONS_00055206


Basic Information

Item Value
RNA id TCONS_00055206
length 1812
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_028439
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4115778 ~ 4119425 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGACCCCTCCAGCTGCCCACCACAGCAGATGAGCACTCACTCTCACTTGAACCACTCGAAGGATCCCAGAACGCTCAAAACATCTGATGCACCAACGCTGAGACAAAACCAAGACTACCAAGAGGCCATGAGTACATTCGGCTACCGTCGGGAACTCAGTAAGTACGAGGATTTGGATGAAGATGAGCTGTTGGCTTCACTCACAGCCGAGGAGCTCCAGGAGCTGGAGAAGGAGTTGGCTGATATTGACCCAGATGACAATCTCCCTATCGGATTGCGGCAAAGAGATCAGACCGCCAAGACTCCCACCGGTACATTCAGTAGGGAAGCTCTGATGAAATACTGGGAAAATGAGACGCGAAAACTGCTGGAGGAGGAAAGGATTGGATCTACAAGCCCAGGAGAGAAAGACAAAGACAGCAGAGAAGAGGAGGAATGTGTTACAGAGAGTGACACTGAAGACTCTGGGGATGAAAAAGATGAGGTTGAAGAAAGTGAGAAAGACACAGAGAAATATAGAGAAGCTGAAGAAGACCGAGAAGAGGAAGAGGAAAGTGAAGCAGATGAACCAGTgacagaggaagaggaggaagaagaagaagaggaagaagatgaCAAGGAAGAACAAGAAGAACAAAAAGAAATCGACAACCATCCTAAAATGGGACACTCAATGGAGTGTAACACTCAACCGCAGCATTGTTGGTCCTCAAATAGTCAATCCAATCAAAGGCAGATAGGTGAACCAAAAGCCCAGAGTCAGGAGCCTGGTCGCACTTCAGGAAACCCCACGGTGGCTGATGAGGTACTGGAAAAGGTCCTCAACAATGACCCAGAAACCACAGAGGTCAACCTCAACAACATTGACAACATCTCCCAAGACACTCTTATCCGATTTGCAGAAGCCTTACGCTCTAACGCACAGGTACGCGTCTTCAGCCTTGCCAACACTCATGCTGATGACCAGGTGGCTTTTGCCATTGCCAAGATGCTGAGAGAAAACCGAAACATCACAAACCTTAACATCGAGTCCAACTTTATCACAGGTAAAGGTATTCTGGCTCTGGTGCAAGCGATCACCCAAAACAATACTCTGACAGAAATGCGATTTCACAATCAAAGGCACATATGTGGAGGTCAGGTGGAGATGGAGATTGTAAAGTTACTAAGGGAAAATACCACGCTAATAAAGTTGGGCTACCAGTTCGACCTTCCAGGCCCACGTATAAGCATGACAACCCTTCTCACCCGCAATCAAGACCTCCAGAGACAGAAGAGAATGCAAGAGCTGCGTCTGCAGAATGGAGGTACAGCAACACCCACAAATCCAAGAACTGTTGCTCTTCAGAAGAGCACGAGCACTTCTTCTCCTCACAGCTCGCCTCGGAGTTCGCCATGGTCATCTCCAAAGCTACCACATGTTGACATGGCCAAGAAAAATGCTCCCCCTGCtcctccaccaccaccaccacctccaccacctcctcctcctccacccccAAAAGCCTCCCTCTCAGAAAATAAACCTCCCTCCAGAATGATTGCTGAGGTGATCAAAAGGCAAGAGGAGACTTCCAAGAAACAGCAACATGGTCCCACCAAATCCAAATCCAAAAAGGGCAAAAAGAGGCCTCCAAATCAAACAGAGACGGACAGCATATTAAAGGAACTTAAGAACGCTTTGAGACCCATCAATGACAGAGAAAACTCCAGACCATCCACACCTCAGCGCTGTGCTCATGATGAACTCATGGCCGCCATCAGAGGCAGCAGCGTCAGAAATCTCAGAAGGGTGAGTATCACAAAATCTG

Function

GO:

id name namespace
GO:0051694 pointed-end actin filament capping biological_process
GO:0006936 muscle contraction biological_process
GO:0007015 actin filament organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-356 Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Orthologous to human LMOD2 (leiomodin 2).

Ensembl:

ensembl_id ENSDART00000138221

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057312 lncRNA downstream 164877 3949226 ~ 3952125 (-) True XLOC_028438
TCONS_00057311 lncRNA downstream 183842 3932533 ~ 3933160 (-) True XLOC_028437
TCONS_00057995 lncRNA downstream 295154 3820858 ~ 3821848 (-) True XLOC_028436
TCONS_00057994 lncRNA downstream 297018 3813618 ~ 3819984 (-) True XLOC_028435
TCONS_00055200 lncRNA downstream 660900 3446011 ~ 3456102 (-) True XLOC_028432
TCONS_00057313 lncRNA upstream 28203 4147628 ~ 4152670 (-) False XLOC_028441
TCONS_00057314 lncRNA upstream 28203 4147628 ~ 4157535 (-) True XLOC_028441
TCONS_00057996 lncRNA upstream 43400 4162825 ~ 4163876 (-) True XLOC_028442
TCONS_00057997 lncRNA upstream 59409 4178834 ~ 4229068 (-) False XLOC_028443
TCONS_00057998 lncRNA upstream 64014 4183439 ~ 4229068 (-) False XLOC_028443
TCONS_00055204 mRNA downstream 305985 3806258 ~ 3811017 (-) True XLOC_028434
TCONS_00055203 mRNA downstream 311010 3792950 ~ 3805992 (-) True XLOC_028433
TCONS_00055202 mRNA downstream 311927 3792950 ~ 3805075 (-) False XLOC_028433
TCONS_00055201 mRNA downstream 312509 3792950 ~ 3804493 (-) False XLOC_028433
TCONS_00055198 mRNA downstream 763407 3343171 ~ 3353595 (-) True XLOC_028429
TCONS_00055207 mRNA upstream 1145 4120570 ~ 4129187 (-) True XLOC_028440
TCONS_00055209 mRNA upstream 115569 4234994 ~ 4256300 (-) False XLOC_028445
TCONS_00055210 mRNA upstream 115807 4235232 ~ 4250317 (-) False XLOC_028445
TCONS_00055211 mRNA upstream 115837 4235262 ~ 4259079 (-) False XLOC_028445
TCONS_00055212 mRNA upstream 115880 4235305 ~ 4259102 (-) False XLOC_028445
TCONS_00055185 other downstream 1430912 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 1954278 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3168160 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 3308549 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 3431583 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055220 other upstream 373141 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 426784 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 810986 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 1250631 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 2317339 6436764 ~ 6451732 (-) False XLOC_028490

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_03649007_03654018.mRNA True 1416 mRNA 0.47 4 CI01000066 3648932 ~ 3654018 (-)