RNA id: TCONS_00055188


Basic Information

Item Value
RNA id TCONS_00055188
length 544
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_028423
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2674898 ~ 2727573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAAAAAGATTAAACTGTTCGGACGCATCGAGCCGAACGCAGCACAATCGGATGTGAGTGGAAGTGTTAGGAAACACCTCCAGGACCAAGTGCCTTTTCCTCGTCTCCGGCAAGCCTGTGGGAAGTTTtttctccctcacacacacatgatCTGCTCCAAACACACTCGTTTTGGACCACAGGGGACTCTTATGTATCCATAGATTGTATAACAGACGCAATCGGGATCGGATATACGCGTACGGAGCGCGCGGTTTGGAGTGCATGCATAAATGCCAAGGAACTGCATGAAAGAGTCATCATCTCCCAAGGAAAACGAGATCTTTCTGTGGAGGATGGATCTGCCCAACAAGGAAAGACGGTCACCGGAAAACAGCCCAAGCTCCAGTCGGCGCTGTTGCTCAAGCTTCAAGATGTTCCTCGTGGCCTTGTCCTTCGCCTATTTCTCCAAGGCTTTATCCGGGAGCTATATGAAAAGCACAATAACTCAGCTGGAAAGACGCTTCGACATCCCCAGTTACTTAATAGGTGTCATTGACGGCAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0043252 sodium-independent organic anion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015347 sodium-independent organic anion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-50 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in bilirubin metabolic disorder. Orthologous to several human genes including SLCO1C1 (solute carrier organic anion transporter family member 1C1).

Ensembl:

ensembl_id ENSDART00000141760

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057310 lncRNA downstream 38833 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057988 lncRNA downstream 225983 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA downstream 225983 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057309 lncRNA downstream 308296 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00055164 lncRNA downstream 653195 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057990 lncRNA upstream 523283 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00057991 lncRNA upstream 578654 3306145 ~ 3308415 (-) True XLOC_028428
TCONS_00057992 lncRNA upstream 664730 3392221 ~ 3405250 (-) False XLOC_028430
TCONS_00055199 lncRNA upstream 668831 3396322 ~ 3405050 (-) True XLOC_028430
TCONS_00057993 lncRNA upstream 680220 3407711 ~ 3415152 (-) True XLOC_028431
TCONS_00055182 mRNA downstream 67993 2548783 ~ 2637710 (-) False XLOC_028421
TCONS_00055183 mRNA downstream 67993 2629776 ~ 2637710 (-) True XLOC_028421
TCONS_00055181 mRNA downstream 68014 2548783 ~ 2637689 (-) False XLOC_028421
TCONS_00055179 mRNA downstream 160358 2530841 ~ 2545345 (-) False XLOC_028420
TCONS_00055189 mRNA upstream 25361 2752852 ~ 2867461 (-) False XLOC_028424
TCONS_00055190 mRNA upstream 25361 2752852 ~ 2868112 (-) True XLOC_028424
TCONS_00055191 mRNA upstream 195708 2923199 ~ 2945306 (-) False XLOC_028425
TCONS_00055192 mRNA upstream 199338 2926829 ~ 2945306 (-) True XLOC_028425
TCONS_00055193 mRNA upstream 220572 2948063 ~ 3023182 (-) False XLOC_028426
TCONS_00055185 other downstream 19613 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 542979 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 1756861 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1897250 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 2020284 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055220 other upstream 1765075 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 1818718 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 2202920 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 2642565 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 3709273 6436764 ~ 6451732 (-) False XLOC_028490

Expression Profile

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